Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3957

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3956: 12324 - KOG1843 Uncharacterized conserved protein, at 991807 to 993961 12324 mRNA_3957: 12325 - KOG0254 Predicted transporter (major facilitator superfamily), at 994846 to 997069 12325 mRNA_3958: 12326 - Hypothetical Protein, at 997210 to 999982 12326

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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993,996 + -0.5
994,013 + -0.0
994,014 - -0.2
994,019 - -0.7
994,029 + -0.8
994,165 - 0.0
994,166 + -1.0
994,179 + 2.0
994,315 + 2.0
994,318 - 1.2
994,344 + 1.9
994,472 - 0.9
994,500 - -0.2
994,556 - -0.2
994,581 + 0.2
994,597 - 0.9
994,597 + 0.0
994,599 - -1.1
994,604 - -1.4
994,613 - -0.7
994,615 + 0.1
994,624 + 1.1
994,644 - -0.5
994,644 - 0.4
994,645 - -0.9
994,645 + -0.2
994,651 - 1.0
994,660 + -0.2
994,679 + -0.6
994,682 + -0.7
994,686 + 1.3
994,702 - -1.1
994,720 - -0.2
994,720 + -0.4
994,723 + -3.5
994,732 - -0.2
994,735 - 0.0
994,736 - 0.6
994,739 - -0.5
994,741 - -0.1
994,746 + 0.7
994,750 + 0.6
994,757 - -0.3
994,759 + -2.8
994,765 - -1.9
994,796 + -0.7
994,799 + -2.1
994,800 - -0.7
994,870 - -0.5
994,913 - -1.7
994,916 + -0.7
994,917 - -0.1
994,924 - -0.2
994,949 - -1.0
994,957 + -0.7
994,981 - -0.4
995,041 + -1.1
995,046 + -0.1
995,183 - 12325 mRNA_3957 0.15 -0.1
995,201 - 12325 mRNA_3957 0.16 -1.8
996,212 - 12325 mRNA_3957 0.61 -0.8
996,523 + 12325 mRNA_3957 0.75 1.3
997,073 + -0.4
997,311 - 0.0
997,381 + -0.2
997,566 - 12326 mRNA_3958 0.13 -0.4
997,701 + 12326 mRNA_3958 0.18 -0.4
997,710 + 12326 mRNA_3958 0.18 0.9
997,845 - 12326 mRNA_3958 0.23 0.2