Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3945

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3944: 12312 - BLAST trna guanine-n1-methyltransferase [Ceraceosorus bomba..., at 961006 to 963369 12312 mRNA_3945: 12313 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 963699 to 967662 12313 mRNA_3946: 12314 - K06176 truD, PUS7 tRNA pseudouridine13 synthase, at 967876 to 970743 12314

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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962,717 + 12312 mRNA_3944 0.72 2.1
963,019 + 12312 mRNA_3944 0.85 0.7
963,478 - 0.2
963,496 - -0.0
963,501 - 0.6
963,502 + 2.4
963,515 + 1.4
963,516 + 0.6
963,517 - 0.3
963,517 - 0.4
963,527 - -2.0
963,529 + 0.6
963,532 - 0.4
963,533 + -0.1
963,665 + 0.3
963,675 - 0.6
963,778 - 0.9
963,797 - -1.7
963,816 + 0.2
964,577 - 12313 mRNA_3945 0.22 0.2
964,965 + 12313 mRNA_3945 0.32 1.0
965,081 - 12313 mRNA_3945 0.35 1.0
965,579 + 12313 mRNA_3945 0.47 1.9
965,955 - 12313 mRNA_3945 0.57 0.9
966,179 + 12313 mRNA_3945 0.63 -0.5
966,855 - 12313 mRNA_3945 0.80 0.6
966,921 - 12313 mRNA_3945 0.81 0.2
967,020 + 12313 mRNA_3945 0.84 0.9
967,636 - 1.1
967,759 + 0.3
967,909 + 0.5
968,235 + 12314 mRNA_3946 0.13 0.1
968,527 - 12314 mRNA_3946 0.23 -0.5
968,539 - 12314 mRNA_3946 0.23 0.9