Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3939

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3938: 12306 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 948000 to 949684 12306 mRNA_3939: 12307 - K13954 yiaY alcohol dehydrogenase, at 950019 to 951719 12307 mRNA_3940: 12308 - KOG3162 Mitochondrial/chloroplast ribosomal protein S18, at 952149 to 952942 12308

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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949,187 + 12306 mRNA_3938 0.70 1.0
949,630 - 0.1
949,728 + 0.7
949,730 - 0.1
949,731 - 0.1
949,748 - 0.0
949,761 + -0.1
949,772 + 0.8
949,865 + 1.0
949,867 - -0.7
949,907 - -0.7
949,921 + 1.8
950,054 + 1.6
950,057 + -1.2
950,214 + 12307 mRNA_3939 0.11 -0.4
950,345 - 12307 mRNA_3939 0.19 0.1
950,766 - 12307 mRNA_3939 0.44 -1.5
950,923 + 12307 mRNA_3939 0.53 0.5
951,207 + 12307 mRNA_3939 0.70 -0.2
951,967 + -0.0
952,096 + 0.1
952,100 - -0.2