Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3938

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3937: 12305 - KOG0692 Pentafunctional AROM protein, at 946371 to 947832 12305 mRNA_3938: 12306 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 948000 to 949684 12306 mRNA_3939: 12307 - K13954 yiaY alcohol dehydrogenase, at 950019 to 951719 12307

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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947,268 + 12305 mRNA_3937 0.61 -1.0
947,294 + 12305 mRNA_3937 0.63 1.4
947,433 - 12305 mRNA_3937 0.73 0.3
947,436 + 12305 mRNA_3937 0.73 -0.1
947,560 - 12305 mRNA_3937 0.81 -0.4
947,592 - 12305 mRNA_3937 0.84 -0.0
947,596 + 12305 mRNA_3937 0.84 0.5
947,714 - -0.2
947,721 + 2.1
947,738 - 0.8
947,780 - 0.8
947,886 + -0.7
948,032 - 0.2
948,309 + 12306 mRNA_3938 0.18 -2.6
948,459 - 12306 mRNA_3938 0.27 2.2
948,590 + 12306 mRNA_3938 0.35 -0.3
948,766 + 12306 mRNA_3938 0.45 0.4
948,806 + 12306 mRNA_3938 0.48 0.1
949,187 + 12306 mRNA_3938 0.70 1.0
949,630 - 0.1
949,728 + 0.7
949,730 - 0.1
949,731 - 0.1
949,748 - 0.0
949,761 + -0.1
949,772 + 0.8
949,865 + 1.0
949,867 - -0.7
949,907 - -0.7
949,921 + 1.8
950,054 + 1.6
950,057 + -1.2
950,214 + 12307 mRNA_3939 0.11 -0.4
950,345 - 12307 mRNA_3939 0.19 0.1