Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3914

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3913: 12281 - SUPERFAMILY--SSF48452, at 885030 to 886525 12281 mRNA_3914: 12282 - HMMPfam-Domain of unknown function (DUF1708)-PF08101,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF48350, at 886816 to 890417 12282 mRNA_3915: 12283 - K01062 PLA2G7, PAFAH platelet-activating factor acetylhydrolase, at 890640 to 892402 12283

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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886,596 + -0.5
886,608 - 0.1
886,619 + -1.5
886,630 - -0.1
886,752 - -0.8
887,065 + 1.1
887,148 + 0.0
887,230 + 12282 mRNA_3914 0.11 -0.2
887,769 - 12282 mRNA_3914 0.26 1.7
888,123 - 12282 mRNA_3914 0.36 -0.1
888,306 + 12282 mRNA_3914 0.41 -0.4
888,625 + 12282 mRNA_3914 0.50 -1.7
888,670 + 12282 mRNA_3914 0.51 -1.7
888,720 - 12282 mRNA_3914 0.53 0.1
889,470 - 12282 mRNA_3914 0.74 0.8
889,712 + 12282 mRNA_3914 0.80 0.0
890,070 - -1.0
890,269 - -0.0
890,311 + -0.4
890,361 - 0.7
890,423 + 2.3
890,445 - -0.1
890,517 - -0.9
890,725 - 0.8