Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3891

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3890: 12258 - HMMPfam-Pal1 cell morphology protein-PF08316, at 832975 to 835014 12258 mRNA_3891: 12259 - K07889 RAB5C Ras-related protein Rab-5C, at 835230 to 836530 12259

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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834,415 - 12258 mRNA_3890 0.71 -0.5
834,529 - 12258 mRNA_3890 0.76 1.2
834,560 - 12258 mRNA_3890 0.78 0.2
834,566 - 12258 mRNA_3890 0.78 2.1
834,579 - 12258 mRNA_3890 0.79 -2.0
834,593 + 12258 mRNA_3890 0.79 -1.7
834,729 + 12258 mRNA_3890 0.86 -0.2
834,734 - 12258 mRNA_3890 0.86 1.8
834,876 - 0.2
834,878 - -0.0
834,894 - -0.7
834,896 - 2.0
834,901 + 0.6
834,916 + -0.3
835,005 - 0.6
835,020 - 0.6
835,037 + 0.4
835,049 + -0.3
835,058 - 0.4
835,064 - 1.5
835,079 + -1.5
835,189 - 0.3
835,655 + 12259 mRNA_3891 0.33 0.9
835,919 - 12259 mRNA_3891 0.53 0.2
835,958 - 12259 mRNA_3891 0.56 1.3
836,106 - 12259 mRNA_3891 0.67 -0.8
836,121 + 12259 mRNA_3891 0.68 -1.3
836,534 - -0.5
836,552 - -1.2
836,692 - 0.1
836,843 + 1.4
836,967 - -1.0
837,414 - 0.1
837,492 + -0.7