Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3888

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3887: 12255 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 826218 to 829062 12255 mRNA_3888: 12256 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 829400 to 831173 12256 mRNA_3889: 12257 - K00587 ICMT, STE14 protein-S-isoprenylcysteine O-methyltransferase, at 831384 to 832562 12257

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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828,736 - 12255 mRNA_3887 0.89 -0.3
829,062 - -1.3
829,239 - -0.1
829,240 + 0.0
829,280 + -0.4
829,390 - -0.0
829,646 + 12256 mRNA_3888 0.14 -0.3
829,710 + 12256 mRNA_3888 0.17 0.1
829,812 - 12256 mRNA_3888 0.23 0.2
830,089 - 12256 mRNA_3888 0.39 0.3
830,092 + 12256 mRNA_3888 0.39 0.2
830,128 - 12256 mRNA_3888 0.41 1.5
830,264 - 12256 mRNA_3888 0.49 -0.2
830,790 + 12256 mRNA_3888 0.78 2.1
830,981 - 12256 mRNA_3888 0.89 -0.7
831,093 - 0.1
831,164 + 0.6
831,224 + 1.4
831,232 - 2.8
831,232 - 0.4
831,239 + 0.7
831,242 - 0.0
831,246 + 2.3
831,251 - -1.1
831,254 - 2.7
831,260 - 0.1
831,261 + 0.5
831,263 + -0.3
831,264 + 0.3
831,276 + -0.0
831,288 + 0.8
831,293 - 0.0
831,300 - -0.2
831,314 - 0.1
831,316 - -0.4
831,320 - 0.2
831,351 - 0.5
831,354 - 1.2
831,365 - 0.2
831,435 - 1.8
831,614 - 12257 mRNA_3889 0.20 1.2
831,777 + 12257 mRNA_3889 0.33 -1.1
831,855 + 12257 mRNA_3889 0.40 0.2
832,169 + 12257 mRNA_3889 0.67 -0.5