Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3880

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3879: 12247 - Interpro Selenoprotein SelK_SelG, at 811174 to 811650 12247 mRNA_3880: 12248 - K00262 E1.4.1.4, gdhA glutamate dehydrogenase (NADP+), at 812217 to 813988 12248 mRNA_3881: 12249 - Hypothetical Protein, at 814368 to 814862 12249

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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811,271 + 12247 mRNA_3879 0.20 1.3
811,297 - 12247 mRNA_3879 0.26 -1.0
811,303 - 12247 mRNA_3879 0.27 0.1
811,593 - 12247 mRNA_3879 0.88 0.8
811,603 - 0.1
811,625 + 0.6
812,620 + 12248 mRNA_3880 0.23 0.7
812,764 + 12248 mRNA_3880 0.31 -2.1
812,788 + 12248 mRNA_3880 0.32 -2.5
813,371 - 12248 mRNA_3880 0.65 -1.5
813,668 + 12248 mRNA_3880 0.82 -3.6
813,906 - -2.3
813,937 + -2.4
814,071 + -0.2
814,073 + -0.4
814,079 - -0.7
814,086 - 0.2
814,086 - 1.0
814,093 - -0.1
814,094 + 0.2
814,095 + -0.9
814,098 - -0.9
814,110 - 0.4
814,113 + -1.2
814,119 - -1.3
814,121 + -0.3
814,128 + 0.5
814,137 - 1.7
814,138 - -1.0
814,144 + -0.8
814,152 - -1.3
814,154 - -1.7
814,162 + -1.1
814,162 - 1.0
814,171 - -1.8
814,189 - -0.7
814,197 + 1.9
814,304 + -2.8
814,305 - -0.3
814,316 + 1.5
814,317 - -0.3
814,320 - -0.5
814,333 + -0.3
814,334 + -0.1
814,356 + 0.1
814,386 - 0.4
814,398 - 0.2
814,402 - 0.5
814,405 + 1.0
814,421 - 12249 mRNA_3881 0.11 -0.6
814,422 + 12249 mRNA_3881 0.11 -2.1
814,472 - 12249 mRNA_3881 0.21 0.1
814,477 + 12249 mRNA_3881 0.22 0.9
814,478 - 12249 mRNA_3881 0.22 -0.2
814,492 - 12249 mRNA_3881 0.25 1.1
814,492 + 12249 mRNA_3881 0.25 -0.1
814,499 + 12249 mRNA_3881 0.26 1.1
814,506 - 12249 mRNA_3881 0.28 -1.0
814,529 - 12249 mRNA_3881 0.33 -0.2
814,539 + 12249 mRNA_3881 0.35 1.1
814,582 - 12249 mRNA_3881 0.43 -0.8
814,651 - 12249 mRNA_3881 0.57 0.5
814,799 - 12249 mRNA_3881 0.87 0.4
814,806 - 12249 mRNA_3881 0.88 1.9
814,806 - 12249 mRNA_3881 0.88 -0.4
814,942 + 1.7
814,943 - -0.3
814,951 - 1.4
814,973 + -0.2