Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3864

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3863: 12231 - KOG1434 Meiotic recombination protein Dmc1, at 769821 to 771118 12231 mRNA_3864: 12232 - K08737 MSH6 DNA mismatch repair protein MSH6, at 771424 to 775679 12232

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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770,795 - 12231 mRNA_3863 0.75 -1.1
770,994 - 1.9
771,394 - 0.2
771,430 + 1.1
771,542 + 0.9
771,549 - 0.7
771,550 - -1.5
771,602 + 1.4
771,616 + -0.6
771,720 - -0.0
771,862 + 12232 mRNA_3864 0.10 0.2
772,017 + 12232 mRNA_3864 0.14 0.5
772,128 + 12232 mRNA_3864 0.17 -1.5
772,209 - 12232 mRNA_3864 0.18 0.3
772,306 - 12232 mRNA_3864 0.21 0.1
772,354 - 12232 mRNA_3864 0.22 1.4
772,355 + 12232 mRNA_3864 0.22 -1.0
772,487 + 12232 mRNA_3864 0.25 -0.2
772,634 - 12232 mRNA_3864 0.28 0.4
772,643 + 12232 mRNA_3864 0.29 -1.2
772,657 + 12232 mRNA_3864 0.29 1.2
772,745 - 12232 mRNA_3864 0.31 2.3
772,866 + 12232 mRNA_3864 0.34 2.6
772,973 + 12232 mRNA_3864 0.36 0.1
772,981 + 12232 mRNA_3864 0.37 1.6
772,988 + 12232 mRNA_3864 0.37 0.8
773,051 + 12232 mRNA_3864 0.38 -1.0
773,051 + 12232 mRNA_3864 0.38 -0.8
773,273 - 12232 mRNA_3864 0.43 -0.2
773,370 + 12232 mRNA_3864 0.46 1.3
773,378 + 12232 mRNA_3864 0.46 0.8
773,483 - 12232 mRNA_3864 0.48 2.9
773,504 + 12232 mRNA_3864 0.49 -0.2
773,662 + 12232 mRNA_3864 0.53 0.3
773,662 + 12232 mRNA_3864 0.53 0.3
773,771 - 12232 mRNA_3864 0.55 2.0
773,801 + 12232 mRNA_3864 0.56 0.3
773,869 - 12232 mRNA_3864 0.57 0.4
773,968 - 12232 mRNA_3864 0.60 0.4
774,049 + 12232 mRNA_3864 0.62 1.5
774,083 - 12232 mRNA_3864 0.62 0.8
774,231 - 12232 mRNA_3864 0.66 1.0
774,250 + 12232 mRNA_3864 0.66 0.5
774,250 + 12232 mRNA_3864 0.66 0.5
774,359 + 12232 mRNA_3864 0.69 -1.2
774,360 - 12232 mRNA_3864 0.69 1.9
774,796 - 12232 mRNA_3864 0.79 1.7
774,902 + 12232 mRNA_3864 0.82 2.0
774,957 - 12232 mRNA_3864 0.83 1.0
775,053 + 12232 mRNA_3864 0.85 -1.1
775,089 - 12232 mRNA_3864 0.86 0.6
775,200 - 12232 mRNA_3864 0.89 -0.7
775,375 - -0.6
775,392 + -0.0
775,394 - 0.9
775,642 - -0.2
775,642 - 1.0
775,762 - 2.1
775,969 - 0.0
776,373 - -0.5
776,526 + -0.4
776,547 + 1.1
776,648 - -0.1
776,653 - 1.1
776,657 - -0.0
776,660 - 0.4
776,677 + 1.1