Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3821

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3820: 12188 - K20046 SLA1 actin cytoskeleton-regulatory complex protein SLA1, at 660836 to 665185 12188 mRNA_3821: 12189 - K19001 HELLS, DDM1 ATP-dependent DNA helicase, at 665422 to 669105 12189 mRNA_3822: 12190 - HMMPfam-Protein of unknown function (DUF2781)-PF10914,PIRSF--PIRSF031032, at 669228 to 670038 12190

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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665,064 - 2.4
665,067 - -0.8
665,193 - 0.1
665,268 - 0.8
665,321 + 3.0
665,329 + 2.0
665,680 - 0.8
665,829 + 12189 mRNA_3821 0.11 1.7
665,956 + 12189 mRNA_3821 0.14 -0.3
666,082 - 12189 mRNA_3821 0.18 0.9
666,148 + 12189 mRNA_3821 0.20 0.2
666,539 + 12189 mRNA_3821 0.30 -0.1
666,608 + 12189 mRNA_3821 0.32 0.1
667,153 - 12189 mRNA_3821 0.47 1.0
667,388 + 12189 mRNA_3821 0.53 -0.5
667,570 + 12189 mRNA_3821 0.58 -1.1
667,906 + 12189 mRNA_3821 0.67 -0.6
668,372 + 12189 mRNA_3821 0.80 -0.9
668,374 + 12189 mRNA_3821 0.80 0.8
668,474 + 12189 mRNA_3821 0.83 -0.6
668,554 - 12189 mRNA_3821 0.85 0.3
668,713 + 12189 mRNA_3821 0.89 -0.7
668,863 + -1.0
668,988 - 0.6
669,009 - 0.5
669,050 + 0.8
669,176 + -0.0
669,178 - 0.1
669,187 - -1.8
669,188 - 1.6
669,197 - -1.9
669,289 + 0.4
669,945 + 12190 mRNA_3822 0.88 0.2
669,993 - -0.7