Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3786

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3785: 12153 - K15178 RTF1 RNA polymerase-associated protein RTF1, at 575682 to 577961 12153 mRNA_3786: 12154 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 578477 to 580207 12154 mRNA_3787: 12155 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 581185 to 583154 12155

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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578,064 + 0.5
578,071 - 0.2
578,079 + -0.2
578,086 - -0.7
578,096 + -0.2
578,102 + 2.5
578,201 - 0.4
578,223 + -0.5
578,943 - 12154 mRNA_3786 0.27 1.6
579,517 - 12154 mRNA_3786 0.60 0.8
579,530 + 12154 mRNA_3786 0.61 2.1
579,651 - 12154 mRNA_3786 0.68 1.9
579,775 - 12154 mRNA_3786 0.75 2.9
579,932 - 12154 mRNA_3786 0.84 2.2
579,966 - 12154 mRNA_3786 0.86 1.8
580,073 - 2.8
580,256 + 1.0
580,264 + -0.6
580,386 - 1.1
580,390 - 0.1
580,395 - 1.1
580,397 + -1.2
580,398 + -0.7
580,399 + 0.2
580,403 - 1.1
580,405 - 1.5
580,408 - 0.4
580,421 + 0.3
580,449 - 0.5
580,485 - 0.4
580,597 - 1.0
580,693 + 0.7
580,791 + 1.3
580,797 + 1.8
580,797 - -0.7
580,798 + -0.2
580,799 - 1.0
580,805 + -0.0
580,806 - 0.1
580,807 + 0.1
580,807 - 0.1
580,809 - -0.3
580,813 + 1.1
580,813 + 0.5
580,817 - -0.5
580,818 + -1.6
580,822 - 1.4
580,826 + 1.9
580,828 + 1.6
580,829 + 0.6
580,837 + 0.8
580,841 + -0.6
580,845 - 0.2
580,964 - 0.8
580,964 - 2.7
580,979 + 1.2