Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3785

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3784: 12152 - KOG1188 WD40 repeat protein, at 573950 to 575324 12152 mRNA_3785: 12153 - K15178 RTF1 RNA polymerase-associated protein RTF1, at 575682 to 577961 12153 mRNA_3786: 12154 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 578477 to 580207 12154

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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575,416 - 1.5
575,591 + 0.2
575,723 + 1.8
575,929 - 12153 mRNA_3785 0.11 -0.4
576,320 - 12153 mRNA_3785 0.28 -0.2
576,920 + 12153 mRNA_3785 0.54 -0.0
577,063 + 12153 mRNA_3785 0.61 -1.7
578,064 + 0.5
578,071 - 0.2
578,079 + -0.2
578,086 - -0.7
578,096 + -0.2
578,102 + 2.5
578,201 - 0.4
578,223 + -0.5
578,943 - 12154 mRNA_3786 0.27 1.6