Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3776

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3775: 12143 - KOG2913 Predicted membrane protein, at 552938 to 553662 12143 mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553955 to 556574 12144 mRNA_3777: 12145 - K20346 TMED4_9_11 p24 family protein alpha, at 557180 to 558034 12145

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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553,013 + 12143 mRNA_3775 0.10 1.3
553,424 + 12143 mRNA_3775 0.67 0.3
553,575 - 12143 mRNA_3775 0.88 0.0
553,652 - -1.1
553,754 + 0.3
553,861 - 0.4
555,033 + 12144 mRNA_3776 0.41 0.9
555,310 - 12144 mRNA_3776 0.52 0.4
555,463 - 12144 mRNA_3776 0.58 -0.3
555,624 - 12144 mRNA_3776 0.64 -0.1
555,774 - 12144 mRNA_3776 0.69 0.5
556,046 - 12144 mRNA_3776 0.80 -0.0
556,367 - -1.4
556,513 + 0.6
556,517 - 0.8
556,688 - -1.1
556,810 + 0.4
556,815 - -0.8
556,818 - 1.5
556,827 + -0.3
556,832 - 1.0
556,842 - 2.0
556,880 - 0.2
556,928 - 0.3
556,973 - -0.0
556,978 - 0.4
556,980 - 0.4
556,981 - 0.5
556,983 - -0.4
557,005 - 0.9
557,007 + 0.5
557,017 + 0.1
557,027 + 0.2
557,041 + -0.5
557,322 - 12145 mRNA_3777 0.17 -1.4
557,419 - 12145 mRNA_3777 0.28 -2.4
557,455 - 12145 mRNA_3777 0.32 2.2
557,564 + 12145 mRNA_3777 0.45 -1.7