Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3770

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3769: 12137 - K10669 TRPT1, TPT1 2'-phosphotransferase, at 541434 to 542462 12137 mRNA_3770: 12138 - K12606 RCD1, CNOT9, CAF40 CCR4-NOT transcription complex subunit 9, at 542766 to 544325 12138 mRNA_3771: 12139 - K02866 RP-L10e, RPL10 large subunit ribosomal protein L10e, at 545294 to 546306 12139

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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542,541 + 0.2
542,556 + 0.1
542,564 + -0.3
542,854 + 1.6
543,006 + 12138 mRNA_3770 0.15 -1.1
543,397 - 12138 mRNA_3770 0.40 1.0
543,990 + 12138 mRNA_3770 0.78 -0.6
544,146 - 12138 mRNA_3770 0.88 -0.7
544,292 + 0.3
544,294 + 2.3
544,298 - -0.4
544,305 - -0.5
544,440 - 1.1
544,491 - 0.1
544,591 - 0.2
544,594 - 0.6
544,594 - 0.1
544,594 - 0.8
544,603 - 0.7