Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3747

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3746: 12114 - Hypothetical Protein, at 487127 to 488004 12114 mRNA_3747: 12115 - Hypothetical Protein, at 488754 to 489655 12115 mRNA_3748: 12116 - K00658 DLST, sucB 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase), at 490464 to 492382 12116

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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487,797 + 12114 mRNA_3746 0.76 -0.8
487,955 - -0.7
487,978 + -0.5
488,005 - -1.2
488,106 + -0.7
488,157 - 0.6
488,252 + 1.5
488,261 - 2.6
488,388 - -0.1
488,712 + 1.3
488,836 + -0.3
488,846 + 12115 mRNA_3747 0.10 0.4
488,863 + 12115 mRNA_3747 0.12 1.4
488,866 - 12115 mRNA_3747 0.12 0.5
488,880 - 12115 mRNA_3747 0.14 0.8
489,084 - 12115 mRNA_3747 0.37 0.9
489,149 + 12115 mRNA_3747 0.44 -1.0
489,440 - 12115 mRNA_3747 0.76 0.6
489,443 - 12115 mRNA_3747 0.76 0.6
489,448 + 12115 mRNA_3747 0.77 0.1
489,449 + 12115 mRNA_3747 0.77 0.2
489,485 - 12115 mRNA_3747 0.81 1.9
489,591 - 2.3
490,120 - 0.0
490,449 + 1.4