Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3708

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3707: 12075 - KOG2846 Predicted membrane protein, at 403479 to 405078 12075 mRNA_3708: 12076 - Hypothetical Protein, at 405406 to 406282 12076 mRNA_3709: 12077 - SUPERFAMILY--SSF52540, at 406586 to 407790 12077

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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405,145 + 1.5
405,150 - 0.8
405,159 + -0.3
405,179 + 0.0
405,290 - 2.5
405,296 - -0.0
405,322 - -0.0
405,519 + 12076 mRNA_3708 0.13 0.3
405,721 + 12076 mRNA_3708 0.36 2.1
405,768 + 12076 mRNA_3708 0.41 -0.3
405,898 + 12076 mRNA_3708 0.56 0.6
405,907 - 12076 mRNA_3708 0.57 0.3
406,186 - 12076 mRNA_3708 0.89 0.2
406,199 + 1.7
406,214 + -1.6
406,235 - -0.6
406,257 + 0.5
406,344 + -1.3
406,345 + 1.1
406,349 + 0.7
406,355 - -1.1
406,357 - -0.1
406,359 - 1.0
406,361 - 0.3
406,364 - 0.4
406,371 + 3.6
406,383 - 0.0
406,383 - -0.3
406,386 + 0.2
406,389 + -0.1
406,393 - 0.2
406,400 - -1.3
406,401 + 0.2
406,419 + -0.2
406,433 - 0.4
406,433 + 0.2
406,452 - 0.3
406,453 + 1.1
406,458 - -2.4
406,465 - 0.2
406,471 + 0.2
406,487 - 1.1
406,490 + 0.2
406,490 - -1.1
406,494 + 0.9
406,494 + -0.1
406,494 + -0.1
406,495 + -0.1
406,498 + -1.2
406,500 + 2.4
406,503 - 2.2
406,507 - 0.2
406,508 - -0.2
406,509 + -0.4
406,509 + -0.8
406,520 + -0.3
406,520 - -0.5
406,521 - -0.2
406,647 - 2.0
406,688 + 0.2
406,796 + 12077 mRNA_3709 0.17 0.4
406,803 + 12077 mRNA_3709 0.18 -0.4
406,921 + 12077 mRNA_3709 0.28 0.3
406,951 + 12077 mRNA_3709 0.30 1.1
407,087 - 12077 mRNA_3709 0.42 1.1
407,251 + 12077 mRNA_3709 0.55 2.3