Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3706

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3704: 12072 - Hypothetical Protein, at 399058 to 399573 12072 mRNA_3705: 12073 - Hypothetical Protein, at 399729 to 400196 12073 mRNA_3706: 12074 - KOG1550 Extracellular protein SEL-1 and related proteins, at 400186 to 402852 12074 mRNA_3707: 12075 - KOG2846 Predicted membrane protein, at 403479 to 405078 12075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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399,549 - -0.3
399,572 + -1.1
399,691 - 1.1
399,702 + 2.0
399,715 + 0.3
399,839 - 12073 mRNA_3705 0.24 1.4
399,872 - 12073 mRNA_3705 0.31 -0.1
399,874 + 12073 mRNA_3705 0.31 0.1
399,903 - 12073 mRNA_3705 0.37 0.7
399,990 - 12073 mRNA_3705 0.56 0.8
400,000 - 12073 mRNA_3705 0.58 0.2
400,292 - -1.3
400,296 + 1.1
400,525 + 12074 mRNA_3706 0.13 0.3
400,769 + 12074 mRNA_3706 0.22 -0.8
400,992 - 12074 mRNA_3706 0.30 0.4
401,166 + 12074 mRNA_3706 0.37 2.4
401,413 - 12074 mRNA_3706 0.46 0.5
401,622 + 12074 mRNA_3706 0.54 2.5
401,626 - 12074 mRNA_3706 0.54 1.5
401,713 - 12074 mRNA_3706 0.57 -0.6
401,912 - 12074 mRNA_3706 0.65 0.8
401,922 + 12074 mRNA_3706 0.65 -0.8
402,056 + 12074 mRNA_3706 0.70 -0.4
402,158 - 12074 mRNA_3706 0.74 -0.9
402,180 - 12074 mRNA_3706 0.75 1.0
402,196 + 12074 mRNA_3706 0.75 -0.8
403,035 - -0.4
403,077 + -0.6
403,079 + 1.0
403,163 + 0.0
403,204 + -0.1
403,215 - 0.3
403,226 + -0.2
403,322 + 0.9
403,344 - -0.1
403,350 - -1.6
403,357 - -0.6
403,358 - 1.8
403,359 - -1.2
403,383 + 0.4
403,384 + 0.7
403,529 - -0.1