Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3700

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3699: 12067 - KOG0870 DNA polymerase epsilon, subunit D, at 386627 to 387665 12067 mRNA_3700: 12068 - K03020 RPC19, POLR1D DNA-directed RNA polymerases I and III subunit RPAC2, at 387944 to 388740 12068 mRNA_3701: 12069 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 389089 to 390202 12069

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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387,133 - 12067 mRNA_3699 0.49 0.4
387,134 - 12067 mRNA_3699 0.49 -1.4
387,261 - 12067 mRNA_3699 0.61 1.7
387,713 + -0.9
387,745 - 0.6
387,876 + 0.4
388,030 + 12068 mRNA_3700 0.11 -0.2
388,030 - 12068 mRNA_3700 0.11 0.1
388,774 + 0.1
388,777 + -0.7
388,784 - 0.3
388,897 + 0.5
388,899 + -1.0
388,908 + 0.5
388,914 + 0.1
388,927 - -0.7
388,934 - 0.2
389,054 - 0.1
389,054 - -0.2
389,093 - -0.4
389,205 + 12069 mRNA_3701 0.10 -0.1
389,223 + 12069 mRNA_3701 0.12 -0.3
389,621 - 12069 mRNA_3701 0.48 -0.4