Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3677

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3676: 12044 - K11833 USP2_21 ubiquitin carboxyl-terminal hydrolase 2/21, at 319421 to 320803 12044 mRNA_3677: 12045 - KOG0266 WD40 repeat-containing protein, at 321286 to 323880 12045 mRNA_3678: 12046 - K14530 RPP40 ribonucleases P/MRP protein subunit RPP40, at 324600 to 326289 12046

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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321,015 + 0.6
321,121 + -1.0
321,171 + -0.6
321,293 + -0.1
321,311 - 2.2
321,448 - -2.2
321,527 + -1.1
321,712 - 12045 mRNA_3677 0.16 0.7
321,859 - 12045 mRNA_3677 0.22 -0.5
321,980 - 12045 mRNA_3677 0.27 -1.2
321,986 - 12045 mRNA_3677 0.27 -0.0
322,158 + 12045 mRNA_3677 0.34 -0.3
322,634 + 12045 mRNA_3677 0.52 0.2
322,762 + 12045 mRNA_3677 0.57 0.5
322,935 + 12045 mRNA_3677 0.64 0.2
323,188 + 12045 mRNA_3677 0.73 1.1
323,190 - 12045 mRNA_3677 0.73 1.4
323,337 + 12045 mRNA_3677 0.79 -0.3
323,769 - 0.1
323,941 + 0.4
324,054 + 1.2
324,368 - 0.5
324,393 - -1.3
324,393 - 1.1
324,394 - -0.1
324,398 - 0.5
324,402 + -0.7
324,406 + 0.2
324,548 + 0.2