Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3655

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3654: 12022 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 269358 to 271210 12022 mRNA_3655: 12023 - KOG1721 FOG Zn-finger, at 271428 to 272912 12023 mRNA_3656: 12024 - Hypothetical Protein, at 272943 to 273266 12024 mRNA_3657: 12025 - Hypothetical Protein, at 273428 to 273670 12025

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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270,444 - 12022 mRNA_3654 0.59 0.7
270,485 - 12022 mRNA_3654 0.61 -0.7
270,486 + 12022 mRNA_3654 0.61 0.2
270,492 + 12022 mRNA_3654 0.61 -1.7
270,497 - 12022 mRNA_3654 0.61 1.0
270,523 - 12022 mRNA_3654 0.63 1.3
270,626 - 12022 mRNA_3654 0.68 0.7
270,646 + 12022 mRNA_3654 0.70 -0.6
270,650 + 12022 mRNA_3654 0.70 -0.6
270,655 + 12022 mRNA_3654 0.70 0.4
270,811 + 12022 mRNA_3654 0.78 -0.0
270,911 - 12022 mRNA_3654 0.84 0.1
270,934 - 12022 mRNA_3654 0.85 1.0
271,076 - 0.4
271,104 - 0.3
271,116 + 1.0
271,177 - 0.8
271,177 - 1.6
271,248 - -1.1
271,249 + 0.5
271,252 - 0.2
271,254 + 1.1
271,270 + 2.7
271,379 - -0.2
271,405 - -0.1
271,428 + 0.1
271,459 - 0.8
271,552 + -0.0
271,711 + 12023 mRNA_3655 0.19 0.3
271,836 - 12023 mRNA_3655 0.27 -0.0
271,837 + 12023 mRNA_3655 0.28 -0.2
272,009 - 12023 mRNA_3655 0.39 -0.3
272,262 - 12023 mRNA_3655 0.56 0.0
272,438 - 12023 mRNA_3655 0.68 0.7
272,484 + 12023 mRNA_3655 0.71 0.1
272,705 - 12023 mRNA_3655 0.86 -0.4
272,706 + 12023 mRNA_3655 0.86 1.1
273,041 - 12024 mRNA_3656 0.30 -0.8
273,573 + 12025 mRNA_3657 0.60 0.7
273,827 + -0.9