Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3625

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193379 to 194590 11992 mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194842 to 197624 11993 mRNA_3626: 11994 - BLAST SH3 domain-containing protein [Rhizoctonia solani AG-..., at 198016 to 198652 11994

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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194,119 + 11992 mRNA_3624 0.61 0.7
194,560 - -0.3
194,562 + -0.5
194,752 + 1.5
194,755 - 1.0
195,196 + 11993 mRNA_3625 0.13 -0.3
195,482 + 11993 mRNA_3625 0.23 0.7
196,799 + 11993 mRNA_3625 0.70 0.9
197,225 - 11993 mRNA_3625 0.86 0.9
197,364 - -0.4
197,393 - 0.0
197,498 - -0.4
197,522 - 0.1
197,536 + 1.5
197,542 + 0.3
197,545 - 1.4
197,633 + 0.6
197,644 - 1.0
197,681 - 0.0
197,686 + 0.5
197,688 - 0.3
197,696 - -0.1
197,696 - -0.3
197,706 + 1.6
197,713 - 0.1
197,713 - 0.6
197,750 - -0.9
197,755 - 0.8
197,878 - 1.0
197,882 + 1.7
197,885 + 0.7
197,888 + -0.0
197,889 + 0.5
197,891 + 0.8
197,898 - 0.7
197,898 - -0.5
198,011 - -0.6
198,019 - 2.5
198,033 - 0.1
198,196 - 11994 mRNA_3626 0.28 -0.4
198,489 - 11994 mRNA_3626 0.74 0.8