Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3623

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190258 to 192689 11991 mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193379 to 194590 11992

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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189,260 - -0.3
189,272 - -2.1
189,292 - 0.9
189,296 - 0.5
189,304 - 1.8
189,371 + 0.8
189,408 - 0.2
189,432 + 0.1
189,445 - 1.5
189,456 + 0.1
190,499 + 1.0
190,899 + 11991 mRNA_3623 0.26 1.0
191,043 - 11991 mRNA_3623 0.32 0.9
191,504 - 11991 mRNA_3623 0.51 0.5
192,235 + 11991 mRNA_3623 0.81 -0.2
192,361 - 11991 mRNA_3623 0.86 1.0
192,665 - -0.2
192,814 + 0.4
192,873 + 1.7
192,949 - -0.0
192,960 + -0.1
192,977 - 0.6
192,985 - 2.1
193,114 + 0.7
193,124 + -0.1
193,126 + 0.7
193,139 + -1.8