Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3601

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3600: 11968 - HMMPfam-PWWP domain-PF00855,ProSiteProfiles-PWWP domain profile.-PS50812,SMART-domain with conserved PWWP motif-SM00293,SUPERFAMILY--SSF63748, at 140474 to 142309 11968 mRNA_3601: 11969 - K11367 CHD1 chromodomain-helicase-DNA-binding protein 1, at 143237 to 148837 11969 mRNA_3602: 11970 - K10839 RAD23, HR23 UV excision repair protein RAD23, at 149343 to 150921 11970

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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142,602 - 1.7
142,772 - -0.9
142,793 + -0.1
142,861 - -0.8
142,915 + 2.2
142,916 - 2.4
142,923 + 1.3
142,932 - 0.1
142,955 - 0.4
142,958 - 1.0
143,046 - 1.2
143,076 + 0.1
143,098 - 0.4
143,255 - -0.4
143,416 + -1.7
143,418 + 3.4
144,125 - 11969 mRNA_3601 0.16 -2.6
148,704 - 0.9
148,707 + 1.4
148,850 - -0.1
148,854 - 2.0
148,986 + -1.1
149,011 - 1.4
149,019 + -0.7
149,105 + 0.4
149,127 - -0.0
149,275 + 0.2
149,289 - -1.0
149,297 - 0.2
149,609 - 11970 mRNA_3602 0.17 -1.1