Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3595

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3594: 11962 - K01555 FAH, fahA fumarylacetoacetase, at 127609 to 129068 11962 mRNA_3595: 11963 - K09838 ZEP, ABA1 zeaxanthin epoxidase, at 129467 to 131137 11963 mRNA_3596: 11964 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 131256 to 132687 11964

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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128,548 - 11962 mRNA_3594 0.64 0.4
128,693 + 11962 mRNA_3594 0.74 -0.5
129,007 + 1.4
129,304 - -0.2
129,856 - 11963 mRNA_3595 0.23 -2.0
130,317 - 11963 mRNA_3595 0.51 0.8
130,326 + 11963 mRNA_3595 0.51 -0.4
130,453 - 11963 mRNA_3595 0.59 -0.5
130,462 + 11963 mRNA_3595 0.60 0.2
131,008 + -0.8
131,062 + 0.9
131,074 + 0.3
131,076 + 0.4
131,198 + -0.4
131,200 + 0.4
131,254 - 0.8
131,268 - -0.3
131,268 - -0.1
131,276 - 0.5
131,276 - 0.3
131,277 + 0.4
131,278 - -1.0
131,278 + -0.6
131,279 + 0.8
131,285 + 1.3
131,287 + -0.6
131,302 - 1.0
131,302 - -0.3
131,303 - 2.8
131,304 + -0.4
131,308 + 2.6
131,310 + -0.1
131,312 + 1.1
131,318 - 1.6
131,320 - 1.1
131,326 + 0.4
131,326 + 2.2
131,337 + -0.2
131,338 + 1.7
131,339 + 1.3
131,340 - 0.3
131,352 - 1.9
131,354 - 0.2
131,367 - 0.3
131,418 - 11964 mRNA_3596 0.11 1.0
131,425 - 11964 mRNA_3596 0.12 -0.3
131,449 - 11964 mRNA_3596 0.13 -0.3
131,467 - 11964 mRNA_3596 0.15 -0.0
131,492 + 11964 mRNA_3596 0.16 0.8
131,607 + 11964 mRNA_3596 0.25 -0.2
131,608 + 11964 mRNA_3596 0.25 0.8
131,654 + 11964 mRNA_3596 0.28 1.2
131,877 + 11964 mRNA_3596 0.43 1.5
131,921 - 11964 mRNA_3596 0.46 0.7