Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3581

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3580: 11948 - KOG0715 Molecular chaperone (DnaJ superfamily), at 97177 to 97844 11948 mRNA_3581: 11949 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 97924 to 100153 11949 mRNA_3582: 11950 - HMMPfam-Polycystin cation channel-PF08016, at 100447 to 103297 11950

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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96,941 - -0.0
97,069 - -0.2
97,201 - 0.9
97,372 + 11948 mRNA_3580 0.29 1.7
97,627 - 11948 mRNA_3580 0.67 0.6
97,802 - 0.6
97,809 + 2.4
97,821 - 0.3
97,822 + 0.0
97,854 - 1.0
97,854 + 0.0
97,855 - 0.8
97,858 + -1.5
97,858 - 0.4
97,860 - 1.2
97,863 + -0.4
97,877 + 0.1
97,877 + 1.9
97,881 + 1.0
97,989 - 1.4
98,009 - -1.1
98,065 + 0.3
98,068 - 0.7
98,306 - 11949 mRNA_3581 0.17 1.1
98,334 - 11949 mRNA_3581 0.18 -0.6
98,338 - 11949 mRNA_3581 0.19 1.9
98,343 - 11949 mRNA_3581 0.19 -0.2
98,344 - 11949 mRNA_3581 0.19 -0.6
98,344 + 11949 mRNA_3581 0.19 2.0
98,355 + 11949 mRNA_3581 0.19 0.6
98,358 + 11949 mRNA_3581 0.19 3.2
98,378 + 11949 mRNA_3581 0.20 1.6
98,501 - 11949 mRNA_3581 0.26 -1.9
98,514 + 11949 mRNA_3581 0.26 0.9
98,604 + 11949 mRNA_3581 0.30 0.3
98,793 - 11949 mRNA_3581 0.39 0.6
99,075 - 11949 mRNA_3581 0.52 0.6
99,096 + 11949 mRNA_3581 0.53 -0.3
99,361 - 11949 mRNA_3581 0.64 0.6
99,407 + 11949 mRNA_3581 0.67 1.1
99,518 - 11949 mRNA_3581 0.71 -0.4
99,528 - 11949 mRNA_3581 0.72 1.9
99,557 - 11949 mRNA_3581 0.73 0.1
99,652 + 11949 mRNA_3581 0.77 -0.9
99,703 - 11949 mRNA_3581 0.80 0.0
99,858 - 11949 mRNA_3581 0.87 -0.4
100,348 - 0.1
100,648 - 0.1
101,094 - 11950 mRNA_3582 0.23 -1.3