Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3577

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3576: 11944 - Hypothetical Protein, at 87392 to 87994 11944 mRNA_3577: 11945 - K04567 KARS, lysS lysyl-tRNA synthetase, class II, at 88992 to 92589 11945 mRNA_3578: 11946 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 92960 to 93719 11946

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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88,030 - -0.2
88,142 - 1.1
88,436 - -0.0
88,741 - -0.9
88,894 - 1.4
88,898 - -1.0
90,413 - 11945 mRNA_3577 0.39 0.4
91,602 + 11945 mRNA_3577 0.73 0.3
92,548 - 2.0
92,550 - 1.9
92,554 + -0.8
92,568 + 1.3
92,570 - 1.2
92,702 - 1.6
92,706 + 0.6
92,711 - -0.4
92,712 - 0.4
92,717 - 1.6
92,723 - -0.6
92,724 - 0.5
92,728 - 0.8
92,744 + 0.3
92,766 - -0.8
92,778 - -1.0
92,815 + 0.2
92,834 - 0.5
92,841 - 0.0
92,846 - 0.5
92,846 + -0.9
92,847 + 0.4
92,861 - 0.5
92,863 - 1.3
92,869 - 0.8
92,875 + 0.6
92,876 + -1.2
92,876 + -0.1
92,879 + 1.4
92,879 + -1.3
92,886 - -0.4