Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3556

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3555: 11923 - Hypothetical Protein, at 37536 to 38312 11923 mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38444 to 40817 11924 mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41446 to 43898 11925

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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37,505 + -0.2
37,550 - 0.1
37,558 - 1.1
37,568 - -0.6
37,569 + -1.3
37,571 + -0.5
37,609 + -0.3
37,610 - 1.1
37,630 - 11923 mRNA_3555 0.12 0.3
37,630 + 11923 mRNA_3555 0.12 -0.0
37,632 + 11923 mRNA_3555 0.12 0.4
37,636 + 11923 mRNA_3555 0.13 -0.5
37,646 + 11923 mRNA_3555 0.14 1.4
37,650 - 11923 mRNA_3555 0.15 0.1
37,684 - 11923 mRNA_3555 0.19 0.7
37,746 + 11923 mRNA_3555 0.27 -0.0
37,753 + 11923 mRNA_3555 0.28 1.2
37,760 + 11923 mRNA_3555 0.29 0.6
37,763 + 11923 mRNA_3555 0.29 0.6
37,812 - 11923 mRNA_3555 0.36 3.2
37,822 - 11923 mRNA_3555 0.37 -0.7
37,833 + 11923 mRNA_3555 0.38 0.0
37,833 - 11923 mRNA_3555 0.38 -0.3
37,835 + 11923 mRNA_3555 0.38 0.3
37,844 - 11923 mRNA_3555 0.40 1.8
37,848 - 11923 mRNA_3555 0.40 0.9
37,861 + 11923 mRNA_3555 0.42 0.7
37,865 - 11923 mRNA_3555 0.42 -0.1
37,867 + 11923 mRNA_3555 0.43 1.3
37,870 + 11923 mRNA_3555 0.43 1.5
37,871 + 11923 mRNA_3555 0.43 -0.6
37,877 + 11923 mRNA_3555 0.44 1.0
37,885 - 11923 mRNA_3555 0.45 1.4
37,920 + 11923 mRNA_3555 0.49 1.1
37,920 + 11923 mRNA_3555 0.49 -0.6
37,924 + 11923 mRNA_3555 0.50 0.8
37,931 + 11923 mRNA_3555 0.51 -0.4
37,979 + 11923 mRNA_3555 0.57 -0.8
37,984 + 11923 mRNA_3555 0.58 -0.4
37,994 + 11923 mRNA_3555 0.59 1.5
38,032 + 11923 mRNA_3555 0.64 1.1
38,081 - 11923 mRNA_3555 0.70 -0.3
38,081 - 11923 mRNA_3555 0.70 0.6
38,084 - 11923 mRNA_3555 0.71 0.2
38,086 + 11923 mRNA_3555 0.71 -0.4
38,090 + 11923 mRNA_3555 0.71 0.5
38,115 + 11923 mRNA_3555 0.75 0.2
38,128 + 11923 mRNA_3555 0.76 0.1
38,163 - 11923 mRNA_3555 0.81 0.6
38,183 + 11923 mRNA_3555 0.83 0.9
38,193 + 11923 mRNA_3555 0.85 0.6
38,234 + 11923 mRNA_3555 0.90 -0.5
38,253 - 0.7
38,254 - -0.4
38,256 - -0.0
38,257 + 2.4
38,258 - 0.4
38,258 - 0.2
38,269 + -0.4
38,272 + 1.1
38,275 + -0.1
38,285 + 0.3
38,411 + 0.4
38,421 - -0.5
38,431 - 0.7
38,476 + -0.0
38,548 + 0.3
38,580 + -0.1
38,612 + -0.2
38,706 - 11924 mRNA_3556 0.11 0.4
38,767 + 11924 mRNA_3556 0.14 -0.8
38,904 + 11924 mRNA_3556 0.19 1.9
39,199 - 11924 mRNA_3556 0.32 0.7
39,206 + 11924 mRNA_3556 0.32 0.7
39,447 - 11924 mRNA_3556 0.42 2.3
39,471 - 11924 mRNA_3556 0.43 -0.0
39,481 + 11924 mRNA_3556 0.44 2.0
39,517 + 11924 mRNA_3556 0.45 -0.6
39,760 + 11924 mRNA_3556 0.55 0.9
39,781 - 11924 mRNA_3556 0.56 -0.0
39,865 - 11924 mRNA_3556 0.60 1.3
40,205 - 11924 mRNA_3556 0.74 -0.5
40,298 + 11924 mRNA_3556 0.78 -0.5
40,353 + 11924 mRNA_3556 0.80 0.3
40,357 + 11924 mRNA_3556 0.81 -0.0
40,402 - 11924 mRNA_3556 0.82 0.9
40,937 + -0.2
40,974 + -0.1
41,079 - 2.4
41,080 - -0.2
41,082 - 0.2
41,084 + 0.2
41,224 + 0.6
41,226 - 0.9
41,227 + -0.4
41,234 + 2.3
41,242 + -0.2
41,261 - 0.8
41,369 - -0.8
41,371 - 0.0
41,391 - 0.2
41,396 + -0.4
41,405 + 0.1
41,564 - 0.1
41,678 - 1.8
41,692 - 11925 mRNA_3557 0.10 1.2
41,692 + 11925 mRNA_3557 0.10 0.7