Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3507

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3506: 11874 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 259634 to 260419 11874 mRNA_3507: 11875 - K12251 aguB N-carbamoylputrescine amidase, at 260634 to 261961 11875 mRNA_3508: 11876 - K00273 DAO, aao D-amino-acid oxidase, at 262160 to 263731 11876

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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259,893 - 11874 mRNA_3506 0.33 0.6
260,009 + 11874 mRNA_3506 0.48 1.2
260,042 - 11874 mRNA_3506 0.52 1.9
260,062 + 11874 mRNA_3506 0.54 -0.2
260,487 + 1.1
260,492 - -2.1
260,500 - 0.8
260,911 - 11875 mRNA_3507 0.21 0.1
260,923 - 11875 mRNA_3507 0.22 -0.2
261,047 + 11875 mRNA_3507 0.31 1.1
261,060 + 11875 mRNA_3507 0.32 0.0
261,223 + 11875 mRNA_3507 0.44 0.9
261,476 + 11875 mRNA_3507 0.63 1.2
261,525 - 11875 mRNA_3507 0.67 0.2
261,664 + 11875 mRNA_3507 0.78 0.6
262,069 - -0.5
262,210 - 0.3
262,247 + -0.2
262,366 - 11876 mRNA_3508 0.13 0.0
262,526 - 11876 mRNA_3508 0.23 1.1
262,529 + 11876 mRNA_3508 0.23 -0.8
262,544 + 11876 mRNA_3508 0.24 -1.8
262,676 + 11876 mRNA_3508 0.33 -0.3