Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3496

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3494: 11862 - SUPERFAMILY--SSF160104, at 237336 to 238428 11862 mRNA_3495: 11863 - KOG4118 Uncharacterized conserved protein, at 238693 to 239237 11863 mRNA_3496: 11864 - KOG1198 Zinc-binding oxidoreductase, at 239425 to 240814 11864 mRNA_3497: 11865 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 241064 to 241942 11865

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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238,654 + -1.0
238,677 - 1.1
238,687 - 0.3
239,529 - -2.2
239,546 + 0.2
239,690 - 11864 mRNA_3496 0.19 1.2
239,832 + 11864 mRNA_3496 0.29 -3.2
239,832 + 11864 mRNA_3496 0.29 0.6
239,882 - 11864 mRNA_3496 0.33 -0.8
240,235 + 11864 mRNA_3496 0.58 -0.9
240,425 - 11864 mRNA_3496 0.72 0.8
240,526 - 11864 mRNA_3496 0.79 0.6
240,714 + 0.7
240,815 + 0.1
240,824 - -0.1
240,826 - 1.5
240,836 + 1.0
240,844 - -1.0
240,954 - 2.4
240,971 - -1.5
240,985 + 1.2
240,988 + 0.1
240,998 - -0.3
241,007 + -0.5
241,150 + -0.7
241,253 + 11865 mRNA_3497 0.22 0.1
241,257 - 11865 mRNA_3497 0.22 1.3
241,281 - 11865 mRNA_3497 0.25 0.3
241,299 - 11865 mRNA_3497 0.27 2.4
241,435 - 11865 mRNA_3497 0.42 -0.8
241,566 - 11865 mRNA_3497 0.57 1.5
241,583 + 11865 mRNA_3497 0.59 -3.8
241,686 - 11865 mRNA_3497 0.71 -1.9
241,724 - 11865 mRNA_3497 0.75 0.7