Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3482

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3481: 11849 - K01752 E4.3.1.17, sdaA, sdaB, tdcG L-serine dehydratase, at 211233 to 213567 11849 mRNA_3482: 11850 - K03861 PIGP, GPI19, DSCR5 phosphatidylinositol glycan, class P, at 213922 to 215101 11850 mRNA_3483: 11851 - KOG0683 Glutamine synthetase, at 215219 to 215380 11851 mRNA_3484: 11852 - Hypothetical Protein, at 215787 to 216323 11852

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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212,965 - 11849 mRNA_3481 0.74 2.5
212,974 - 11849 mRNA_3481 0.75 0.6
212,982 + 11849 mRNA_3481 0.75 -0.9
213,165 + 11849 mRNA_3481 0.83 1.7
213,474 + -0.5
213,487 + 0.5
213,607 - 0.3
213,613 + 0.3
213,742 + -0.3
213,752 - -0.5
213,757 - 1.0
213,758 - 0.6
213,765 - -1.4
213,783 + -0.5
213,816 + 0.6
213,837 + -0.1
213,872 - 0.0
213,895 - 0.0
213,959 - 0.5
214,083 + 11850 mRNA_3482 0.14 -0.1
214,960 + 11850 mRNA_3482 0.88 -0.2
215,119 + 0.6
215,244 - 11851 mRNA_3483 0.15 -0.0
215,558 + -0.4
215,889 - 11852 mRNA_3484 0.19 -0.3
215,990 + 11852 mRNA_3484 0.38 3.1