Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3472

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3471: 11839 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2 Transcription-silencing protein Clr2, at 181846 to 184835 11839 mRNA_3472: 11840 - HMMPfam-Xylose isomerase-like TIM barrel-PF01261,SUPERFAMILY--SSF51658, at 185364 to 186603 11840 mRNA_3473: 11841 - K11578 ZW10, DSL1 protein transport protein DSL1/ZW10, at 186960 to 196280 11841

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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184,391 - 11839 mRNA_3471 0.85 -1.0
184,488 + 11839 mRNA_3471 0.88 1.1
184,662 + -0.2
184,825 + -1.7
184,964 + 0.1
185,262 - 0.4
185,542 + 11840 mRNA_3472 0.14 1.0
185,573 + 11840 mRNA_3472 0.17 1.3
185,689 + 11840 mRNA_3472 0.26 -0.8
185,693 - 11840 mRNA_3472 0.27 -0.4
185,829 + 11840 mRNA_3472 0.38 0.7
186,432 - 11840 mRNA_3472 0.86 2.8
186,527 - 1.7
186,561 - -1.2
186,571 + 0.1
186,575 - 0.1
186,578 + -0.0
186,581 - -0.2
186,587 + 2.3
186,710 + -0.9
186,735 - 1.2