Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3441

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3440: 11808 - SUPERFAMILY--SSF56112, at 110002 to 112287 11808 mRNA_3441: 11809 - K00729 ALG5 dolichyl-phosphate beta-glucosyltransferase, at 112497 to 113807 11809 mRNA_3442: 11810 - SUPERFAMILY--SSF52047, at 113931 to 115281 11810

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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111,549 + 11808 mRNA_3440 0.68 0.4
111,565 + 11808 mRNA_3440 0.68 -0.2
111,650 + 11808 mRNA_3440 0.72 3.5
111,726 + 11808 mRNA_3440 0.75 -0.2
111,956 - 11808 mRNA_3440 0.85 0.9
111,964 + 11808 mRNA_3440 0.86 -1.1
112,142 + 0.5
112,145 + -1.4
112,151 - 2.6
112,268 - 0.4
112,278 - -0.3
112,406 - 0.1
112,409 + -0.4
112,416 - 0.2
112,429 + -1.0
112,546 - 0.3
112,548 - -0.1
112,559 - 0.3
112,567 - -0.2
112,823 - 11809 mRNA_3441 0.25 0.5
112,839 + 11809 mRNA_3441 0.26 -0.1
112,856 + 11809 mRNA_3441 0.27 0.7
112,878 + 11809 mRNA_3441 0.29 1.4
112,884 + 11809 mRNA_3441 0.30 -0.9
113,125 - 11809 mRNA_3441 0.48 0.0
113,129 + 11809 mRNA_3441 0.48 2.2
113,133 - 11809 mRNA_3441 0.49 1.6
113,178 - 11809 mRNA_3441 0.52 2.6
113,477 - 11809 mRNA_3441 0.75 1.1
113,575 - 11809 mRNA_3441 0.82 -1.4
113,685 + 0.2
113,758 + 1.3
113,909 - 0.4
114,035 + 0.4
114,175 + 11810 mRNA_3442 0.18 -0.9
114,180 - 11810 mRNA_3442 0.18 -0.0
114,182 - 11810 mRNA_3442 0.19 -0.2
114,340 - 11810 mRNA_3442 0.30 0.9
114,568 + 11810 mRNA_3442 0.47 0.1