Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3432

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3432: 11800 - BLAST RecF/RecN/SMC protein [Sistotremastrum niveocremeum H..., at 86676 to 87359 11800 mRNA_3433: 11801 - HMMPfam-Rtr1/RPAP2 family-PF04181,HMMPfam-VMA21-like domain-PF09446,ProSiteProfiles-RTR1-type zinc finger.-PS51479, at 88231 to 90113 11801

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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85,677 - -0.7
85,680 - 1.1
85,713 + 0.5
85,728 + -0.2
85,756 - -0.5
85,937 - 0.5
85,979 - 1.6
85,999 - 1.1
86,004 + 0.9
86,133 + -0.6
86,253 + 0.0
86,256 - 0.4
86,280 + 0.5
86,285 - 1.0
86,479 - -0.1
86,548 + -1.3
86,557 - -0.2
86,581 - 0.1
86,629 + -1.8
86,773 - 11800 mRNA_3432 0.14 -0.1
86,874 + 11800 mRNA_3432 0.29 0.1
87,271 + 11800 mRNA_3432 0.87 -0.2
87,335 + 1.3
87,389 - 1.3
87,422 + 0.8
87,422 - -0.0
87,425 + -1.7
87,443 - 2.3
87,447 + -0.9
87,447 + -0.1
87,488 - 0.8
87,514 - -0.5
87,526 + 1.4
87,537 - -0.4
87,549 + 0.9
87,564 - 0.4
87,566 - -1.5
87,693 + 0.2
87,765 + 0.3
87,781 - 2.7
87,853 - -0.3
87,858 - -0.5
87,871 - -0.5
87,872 + -0.1
87,909 - -1.5
88,004 + 1.3
88,016 + -1.0
88,020 + -0.3
88,070 + -0.6
88,115 + -0.0
88,120 - -0.2
88,279 - 1.2
88,290 + 0.5