Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3419

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50010 to 53314 11787 mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53705 to 57912 11788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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49,097 - -0.5
49,103 + 0.1
49,180 + 0.8
49,194 - 0.5
49,195 + 1.5
49,214 + -1.0
49,325 - 0.8
49,349 - 0.1
49,371 + -0.1
49,372 + -1.4
49,376 - -0.1
49,376 - 1.4
49,378 - -0.5
49,378 - 0.6
49,379 - 0.6
49,384 + -0.9
49,387 + 0.2
49,393 - 0.0
49,396 - 0.9
49,398 + -0.4
49,400 + 0.1
49,402 + -0.1
49,406 + 0.7
49,407 + 0.4
49,409 + 0.7
49,409 + 0.8
49,420 - 0.3
49,472 - -0.2
49,496 - 0.1
49,503 - 0.2
49,505 + 1.1
49,505 + 0.9
49,508 - 0.3
49,524 + 0.4
49,527 + 0.1
49,532 - 0.4
49,534 - 1.3
49,574 + -0.1
49,582 + -0.3
49,605 + -0.9
49,610 + 0.4
49,626 - 1.4
49,626 - -0.5
49,627 - 0.3
49,627 - -0.6
49,629 + 1.3
49,638 - 0.5
49,644 + 1.0
49,663 + 1.2
49,736 - 0.7
49,754 - 0.1
49,766 - 0.4
49,776 + -0.2
49,777 - -0.3
49,784 - 0.6
49,803 - 0.2
49,926 + 1.5
49,933 + 0.7
49,935 - -0.3
49,943 + -0.2
50,075 - 0.3
50,081 - 1.3
50,084 + 0.9
50,089 + 1.3
50,116 + 0.7
50,240 + 0.2
50,240 - 2.7
50,241 + 0.3
50,247 + -0.8
50,269 - 1.6
50,273 - 0.4
50,417 + 11787 mRNA_3419 0.12 -0.8
50,555 + 11787 mRNA_3419 0.16 0.7
50,701 + 11787 mRNA_3419 0.21 1.3
50,973 + 11787 mRNA_3419 0.29 1.0
50,982 - 11787 mRNA_3419 0.29 1.1
51,462 - 11787 mRNA_3419 0.44 1.6
52,264 - 11787 mRNA_3419 0.68 1.8
52,421 - 11787 mRNA_3419 0.73 0.6
52,581 - 11787 mRNA_3419 0.78 -1.6
52,610 - 11787 mRNA_3419 0.79 0.7
52,981 - 11787 mRNA_3419 0.90 2.1
53,417 - 0.0
53,602 - 0.7
53,604 - 0.1
53,609 + -0.4
53,615 - 0.1
53,615 - 0.7
53,616 - -1.0
53,624 + -0.1