Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3405

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3404: 11772 - K13171 SRRM1, SRM160 serine/arginine repetitive matrix protein 1, at 8122 to 9979 11772 mRNA_3405: 11773 - K17922 SNX8, MVP1 sorting nexin-8, at 10068 to 11831 11773 mRNA_3406: 11774 - Hypothetical Protein, at 12464 to 13384 11774

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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10,617 + 11773 mRNA_3405 0.31 0.2
10,659 + 11773 mRNA_3405 0.34 -2.4
11,023 - 11773 mRNA_3405 0.54 0.0
11,294 + 11773 mRNA_3405 0.70 0.2
11,866 + -0.4
12,019 - 0.5
12,034 - 0.1
12,065 - 0.6
12,274 - -0.0
12,305 + 0.1
12,316 - 0.9
12,334 - -0.7
12,341 - 1.4
12,391 + 0.1
12,447 - -0.6
12,453 - 0.3
12,469 - 1.4
12,471 - -0.0
12,473 - 2.4
12,484 - 0.2
12,488 + 1.4
12,503 + 0.0
12,508 + 0.6
12,517 + -1.0
12,519 + -0.7
12,648 + 11774 mRNA_3406 0.20 -0.1
12,661 + 11774 mRNA_3406 0.21 0.2
12,772 - 11774 mRNA_3406 0.33 0.7
12,778 + 11774 mRNA_3406 0.34 -0.7
12,779 - 11774 mRNA_3406 0.34 -0.1
12,799 + 11774 mRNA_3406 0.36 -1.2
12,803 - 11774 mRNA_3406 0.37 -0.8
12,805 - 11774 mRNA_3406 0.37 -0.5
12,817 - 11774 mRNA_3406 0.38 0.2
12,821 + 11774 mRNA_3406 0.39 -0.5
12,821 - 11774 mRNA_3406 0.39 -0.0
12,827 + 11774 mRNA_3406 0.39 0.8