Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3394

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3393: 11761 - KOG3662 Cell division control protein/predicted DNA repair exonuclease, at 571370 to 574049 11761 mRNA_3394: 11762 - HMMPfam-UreF-PF01730, at 574156 to 575292 11762 mRNA_3395: 11763 - K07566 tsaC, rimN, SUA5 L-threonylcarbamoyladenylate synthase, at 575450 to 577006 11763

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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573,325 + 11761 mRNA_3393 0.73 -0.7
573,325 + 11761 mRNA_3393 0.73 -0.1
573,331 + 11761 mRNA_3393 0.73 -1.3
573,347 + 11761 mRNA_3393 0.74 -0.9
573,455 - 11761 mRNA_3393 0.78 -0.0
573,460 + 11761 mRNA_3393 0.78 -0.0
573,471 - 11761 mRNA_3393 0.78 0.6
573,888 + 0.9
574,167 + -0.8
574,167 + 0.4
574,232 + 3.3
574,246 + -0.1
574,311 + 11762 mRNA_3394 0.14 0.5
574,394 + 11762 mRNA_3394 0.21 0.7
574,462 - 11762 mRNA_3394 0.27 -0.8
574,555 + 11762 mRNA_3394 0.35 2.3
574,665 + 11762 mRNA_3394 0.45 0.9
574,723 - 11762 mRNA_3394 0.50 0.1
574,792 - 11762 mRNA_3394 0.56 0.3
574,823 + 11762 mRNA_3394 0.59 0.1
574,826 - 11762 mRNA_3394 0.59 1.5
574,827 - 11762 mRNA_3394 0.59 1.1
574,832 + 11762 mRNA_3394 0.59 1.1
574,898 - 11762 mRNA_3394 0.65 -1.4
574,928 + 11762 mRNA_3394 0.68 1.2
574,942 + 11762 mRNA_3394 0.69 1.1
575,093 - 11762 mRNA_3394 0.82 0.5
575,094 + 11762 mRNA_3394 0.82 0.7
575,388 + 0.9