Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3392

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3391: 11759 - Hypothetical Protein, at 568755 to 569736 11759 mRNA_3392: 11760 - HMMPfam-Caffeine-induced death protein 2-PF09774, at 570084 to 570935 11760 mRNA_3393: 11761 - KOG3662 Cell division control protein/predicted DNA repair exonuclease, at 571370 to 574049 11761

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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569,180 + 11759 mRNA_3391 0.43 -1.1
569,370 + 11759 mRNA_3391 0.63 0.5
569,477 + 11759 mRNA_3391 0.74 -0.2
569,477 - 11759 mRNA_3391 0.74 2.0
569,618 + 11759 mRNA_3391 0.88 1.3
569,639 - 2.2
569,780 - -0.3
569,781 + 2.7
569,791 + 1.6
569,795 - 0.9
569,799 - 0.9
569,803 + 1.1
569,814 - 0.7
569,860 - 0.2
569,864 + 1.0
569,877 + 2.2
569,987 - 1.6
570,007 - 1.3
570,108 - 0.4
570,281 - 11760 mRNA_3392 0.23 -0.0
570,566 - 11760 mRNA_3392 0.57 1.5
570,838 + 11760 mRNA_3392 0.88 -1.3
570,845 + 11760 mRNA_3392 0.89 1.1
570,873 - 0.9
570,874 + 0.3
570,885 - -2.1
570,982 - 0.5
570,990 - -1.2
570,990 - 0.5
570,995 + 0.8
571,109 - 0.3
571,369 + 1.0
571,413 + -0.2
571,417 - 0.2
571,442 - 2.7
571,443 + 1.4
571,601 - 0.9
571,730 + 11761 mRNA_3393 0.13 1.5
571,901 + 11761 mRNA_3393 0.20 -0.0