Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3370

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3369: 11737 - KOG2659 LisH motif-containing protein, at 511919 to 513281 11737 mRNA_3370: 11738 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 513932 to 515418 11738 mRNA_3371: 11739 - K13806 DAGL sn1-specific diacylglycerol lipase, at 516330 to 521387 11739

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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513,086 - 11737 mRNA_3369 0.86 -0.0
513,095 + 11737 mRNA_3369 0.86 -0.4
513,120 + 11737 mRNA_3369 0.88 0.4
513,270 + 0.2
513,338 - 0.0
513,349 + -0.5
513,375 - 0.0
513,379 + 0.2
513,384 - -0.1
513,386 + -1.4
513,402 - 1.8
513,529 + 0.9
513,541 + -0.5
513,640 - 0.2
513,691 + -0.9
513,838 - 1.1
513,848 + -1.1
513,934 - 0.6
513,960 - -0.6
514,002 - 0.9
514,012 + -0.1
514,104 - 11738 mRNA_3370 0.12 0.9
514,110 + 11738 mRNA_3370 0.12 1.5
514,112 - 11738 mRNA_3370 0.12 1.3
514,116 + 11738 mRNA_3370 0.12 1.9
514,118 - 11738 mRNA_3370 0.13 1.0
514,256 + 11738 mRNA_3370 0.22 0.4
514,277 - 11738 mRNA_3370 0.23 -0.3
514,363 + 11738 mRNA_3370 0.29 0.7
514,412 + 11738 mRNA_3370 0.32 -0.1
514,423 - 11738 mRNA_3370 0.33 0.5
514,465 + 11738 mRNA_3370 0.36 0.1
514,576 + 11738 mRNA_3370 0.43 2.4
514,586 + 11738 mRNA_3370 0.44 1.2
514,703 - 11738 mRNA_3370 0.52 0.6
514,865 + 11738 mRNA_3370 0.63 1.3
514,872 + 11738 mRNA_3370 0.63 -0.6
515,010 - 11738 mRNA_3370 0.72 0.3
515,136 + 11738 mRNA_3370 0.81 -2.5
515,183 + 11738 mRNA_3370 0.84 0.9
515,287 - 0.4
515,319 - 0.7
515,329 - -0.4
515,473 + 1.4
515,483 + -1.6
515,485 + 2.5
515,505 + 1.1
515,526 + -0.8
515,583 - -0.1
515,593 + 2.5
515,611 - 0.5
515,638 - 1.4
515,639 - 2.0
515,639 - 1.9
515,642 + 1.0
515,642 - 0.9
515,645 + 0.3
515,647 + 0.1
515,648 + 4.1
515,648 + 0.7
515,648 + -0.8
515,652 - 1.2
515,656 - 0.7
515,658 + -0.7
515,660 + 1.7
515,667 + -0.3
515,669 + 0.4
515,674 - 0.1
515,677 - 0.4
515,677 + 0.0
515,683 + 0.5
515,690 + 0.7
515,710 + 1.9
515,729 - 1.0
515,772 - -0.9
515,875 + -0.9
515,881 - -1.1
515,881 - -0.1
515,881 + -1.0
515,881 - 1.8
515,881 - 1.5
515,882 + 0.8
515,882 - 1.1
515,896 - 0.7
515,901 + -0.9
515,902 + 0.5
515,902 + 0.8
515,905 + 2.0
515,908 - -0.0
515,914 - 2.1
515,914 + -0.1
515,914 - 0.7
515,919 + 1.3
515,920 - 2.7
515,926 + 0.7
515,935 - 0.2
515,940 + 1.1
515,941 - 1.1
515,947 - 1.3
516,164 - 0.7
516,356 - 1.3
516,369 - 0.8