Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3364

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3363: 11731 - K02871 RP-L13, MRPL13, rplM large subunit ribosomal protein L13, at 499965 to 500841 11731 mRNA_3364: 11732 - K15423 PPP4C serine/threonine-protein phosphatase 4 catalytic subunit, at 500916 to 502448 11732

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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499,954 - 0.1
500,007 - -0.1
500,014 - 2.5
500,909 + 1.6
501,031 + 1.2
501,033 - -1.5
501,038 + 1.1
501,052 - -2.1
501,478 + 11732 mRNA_3364 0.37 0.6
501,594 - 11732 mRNA_3364 0.44 0.2
501,765 - 11732 mRNA_3364 0.55 -3.4
502,050 - 11732 mRNA_3364 0.74 1.6
502,172 - 11732 mRNA_3364 0.82 0.4
502,327 - -0.2
502,811 + 0.2
502,816 + -1.3
502,863 + 0.0
502,920 - 0.9
502,926 + 0.6
503,055 + -0.6
503,345 - -1.6
503,353 + -0.6
503,356 - 2.1
503,363 + 0.8
503,363 + 0.6
503,368 + 1.2
503,368 - 0.8
503,377 - 0.4
503,378 - 2.9
503,418 - 0.7