Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3344

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3343: 11711 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 433717 to 434732 11711 mRNA_3344: 11712 - Hypothetical Protein, at 435281 to 435909 11712 mRNA_3345: 11713 - Hypothetical Protein, at 436771 to 439819 11713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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434,344 - 11711 mRNA_3343 0.62 -0.1
434,349 - 11711 mRNA_3343 0.62 -1.4
434,435 + 11711 mRNA_3343 0.71 1.2
434,470 - 11711 mRNA_3343 0.74 -1.0
434,627 + 11711 mRNA_3343 0.90 -0.7
434,627 + 11711 mRNA_3343 0.90 0.4
434,637 + 1.2
434,637 + -0.3
434,642 - 0.9
434,653 + -1.0
434,758 - 0.8
434,771 - 0.4
434,771 - 0.3
434,780 - -0.4
434,788 - 0.2
434,788 + 1.2
434,793 - -0.2
434,793 - 1.1
434,794 - 1.3
434,795 - 1.8
434,797 - -0.5
434,798 - -0.2
434,801 + 0.5
434,806 - 1.1
434,806 - 1.2
434,808 - -0.7
434,810 + -0.1
434,810 - 0.4
434,810 - 0.0
434,811 - 1.1
434,811 - 0.0
434,811 - 0.8
434,814 + -0.9
434,818 - 0.7
434,818 + 0.0
434,820 - 0.1
434,825 + 0.3
434,826 + -0.0
434,835 - -0.4
434,836 + 2.2
434,838 + 0.3
434,839 - 1.4
434,846 + -0.1
434,847 + 1.5
434,851 + 1.1
434,859 + -0.7
434,861 + 0.5
434,862 - -0.1
434,864 + -0.4
434,864 + 1.5
434,901 - 1.1
434,915 - -0.7
434,932 - 0.5
434,933 + -1.1
434,936 + 0.2
434,965 - -0.2
434,968 - 1.3
434,972 - 0.6
434,980 + -0.0
434,982 + -0.7
434,985 - -0.0
434,989 + 0.1
434,994 - 0.2
435,007 - -0.0
435,007 + 0.9
435,008 - 1.3
435,009 + -0.3
435,009 - 0.1
435,014 - 0.6
435,017 - 0.4
435,021 - 0.9
435,022 + 0.8
435,022 + -2.0
435,022 + -2.5
435,022 + 2.3
435,031 - -0.0
435,037 + -0.9
435,039 - 2.6
435,041 - 0.7
435,043 + 0.5
435,044 + -0.8
435,055 + -0.3
435,056 - 0.5
435,057 + 0.2
435,062 - 0.1
435,062 - 0.5
435,067 - 0.6
435,068 - -0.2
435,072 - -0.2
435,077 - 0.4
435,084 - 2.4
435,089 + 1.4
435,092 - -0.5
435,101 + -0.3
435,105 + 0.0
435,184 + 0.5
435,188 - -1.7
435,214 + -0.3
435,218 + -0.7
435,242 + 0.8
435,254 - 0.5
435,270 + 1.1
435,366 - 11712 mRNA_3344 0.14 -1.4
435,367 + 11712 mRNA_3344 0.14 1.9
435,386 - 11712 mRNA_3344 0.17 2.6
435,413 + 11712 mRNA_3344 0.21 -0.4
435,415 - 11712 mRNA_3344 0.21 -0.5
435,425 + 11712 mRNA_3344 0.23 0.6
435,444 + 11712 mRNA_3344 0.26 0.7
435,480 - 11712 mRNA_3344 0.32 -0.6
435,551 - 11712 mRNA_3344 0.43 1.7
435,558 + 11712 mRNA_3344 0.44 0.6
435,687 + 11712 mRNA_3344 0.65 -0.2
435,708 - 11712 mRNA_3344 0.68 -0.2
435,942 - 0.6
436,000 + -0.2
436,006 - 0.4
436,024 - 1.7
436,030 + 0.4
436,100 - 0.1
436,112 + -0.3
436,114 - -0.2
436,130 - 0.3
436,132 - 0.7
436,179 + 0.6
436,179 - 0.8
436,180 + -1.0
436,202 - -0.4
436,212 - -0.5
436,229 - -0.1
436,235 + -2.2
436,238 + -0.3
436,240 + 2.0
436,240 + 0.4
436,242 - 2.6
436,242 - 2.6
436,242 - 1.0
436,250 + 2.2
436,250 + 0.1
436,272 + 1.5
436,275 + -1.2
436,278 + -0.2
436,288 + 0.2
436,297 - -1.6
436,303 + -0.6
436,320 + 1.0
436,321 - -0.6
436,325 + 0.5
436,329 + 0.6
436,332 - 1.9
436,332 - 1.9
436,339 - 1.1
436,342 - 0.8
436,356 - -0.6
436,358 + 0.7
436,457 - -0.2
436,458 - 0.2
436,460 + -0.7
436,471 - 0.3
436,476 - -0.3
436,494 + 1.6
436,505 + 1.1
436,508 - 0.1
436,523 + 1.0
436,526 + -0.1
436,530 - -1.1
436,532 + 2.1
436,557 + 2.4
436,674 + -0.5
436,689 - 0.1
436,787 - 1.1
436,816 + -0.1
436,839 + 0.7
436,841 + 0.6
436,875 + -1.4