Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3278

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3277: 11645 - K14835 NOP2 ribosomal RNA methyltransferase Nop2, at 269606 to 272171 11645 mRNA_3278: 11646 - K14152 HIS4 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase / histidinol dehydrogenase, at 272416 to 277579 11646 mRNA_3279: 11647 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 278313 to 280858 11647

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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274,223 + 11646 mRNA_3278 0.35 -0.3
274,224 - 11646 mRNA_3278 0.35 1.2
274,239 + 11646 mRNA_3278 0.35 0.9
274,258 + 11646 mRNA_3278 0.36 0.1
274,260 + 11646 mRNA_3278 0.36 1.1
274,719 + 11646 mRNA_3278 0.45 1.0
274,828 - 11646 mRNA_3278 0.47 -0.3
274,832 - 11646 mRNA_3278 0.47 -1.1
274,833 - 11646 mRNA_3278 0.47 1.9
274,848 - 11646 mRNA_3278 0.47 0.4
274,994 - 11646 mRNA_3278 0.50 0.4
275,118 + 11646 mRNA_3278 0.52 0.6
275,435 - 11646 mRNA_3278 0.58 -0.4
275,437 - 11646 mRNA_3278 0.59 0.7
276,140 - 11646 mRNA_3278 0.72 -0.3
276,184 - 11646 mRNA_3278 0.73 1.1
276,309 - 11646 mRNA_3278 0.75 -1.2
276,723 - 11646 mRNA_3278 0.83 1.0
277,751 - -0.7
277,752 - 1.0
277,752 + -0.2
278,107 + -0.3
278,320 - 1.4
278,335 + -0.5