Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3252

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3251: 11619 - K19986 EXOC8, SEC84 exocyst complex component 8, at 214294 to 217210 11619 mRNA_3252: 11620 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 217348 to 218013 11620 mRNA_3253: 11621 - KOG1201 Hydroxysteroid 17-beta dehydrogenase 11, at 218422 to 220105 11621

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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216,830 + 11619 mRNA_3251 0.87 2.1
216,988 - 0.7
217,130 - -0.5
217,136 - 1.9
217,155 + 0.5
217,419 - 11620 mRNA_3252 0.11 -1.8
217,516 - 11620 mRNA_3252 0.25 -0.1
217,530 + 11620 mRNA_3252 0.27 0.5
217,534 - 11620 mRNA_3252 0.28 -1.4
217,570 - 11620 mRNA_3252 0.33 -0.9
217,867 - 11620 mRNA_3252 0.78 0.8
217,869 + 11620 mRNA_3252 0.78 0.8
217,881 + 11620 mRNA_3252 0.80 1.5
217,939 - 11620 mRNA_3252 0.89 -0.5
218,014 + -0.6
218,017 + 0.6
218,136 - 0.6
218,164 + 0.6
218,166 + 1.0
218,183 + -0.1
218,324 - 0.0
218,330 - 0.0
218,340 + -0.5
218,344 - -1.5
218,345 - 0.2
218,346 - 0.8
218,350 + 0.2
218,359 + -0.5
218,361 + -1.2
218,363 - -0.1
218,523 + -0.1
218,661 + 11621 mRNA_3253 0.14 0.1
218,802 - 11621 mRNA_3253 0.23 -0.7
218,811 - 11621 mRNA_3253 0.23 0.2
218,821 + 11621 mRNA_3253 0.24 -0.4
218,965 - 11621 mRNA_3253 0.32 0.6
218,969 + 11621 mRNA_3253 0.32 0.8