Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3230

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3229: 11597 - K01113 phoD alkaline phosphatase D, at 152510 to 154539 11597 mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155480 to 157759 11598 mRNA_3231: 11599 - KOG1430 C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases, at 157802 to 159637 11599

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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154,487 - -0.7
154,897 - 1.2
154,921 - 0.0
154,927 - 1.8
155,030 - -0.5
155,044 - -2.2
155,076 + 1.7
155,192 - 0.1
155,211 + 0.2
155,214 + -0.7
155,336 - 0.1
155,344 - -0.1
155,348 - 0.7
155,350 - 0.5
155,350 + 0.6
155,352 - 0.4
155,356 + 0.3
155,363 - 0.3
155,368 - 2.2
155,370 - 1.5
155,371 - -0.2
155,373 + 0.9
155,375 - -1.6
155,376 + -0.5
155,378 + -2.3
155,378 + -0.5
155,383 + 0.2
155,419 - -0.4
155,543 - 0.0
155,553 - 0.2
155,942 + 11598 mRNA_3230 0.20 0.8
155,979 + 11598 mRNA_3230 0.22 0.5
156,136 + 11598 mRNA_3230 0.29 0.8
156,139 - 11598 mRNA_3230 0.29 -0.4
156,421 - 11598 mRNA_3230 0.41 -2.7
156,560 - 11598 mRNA_3230 0.47 0.5
156,566 - 11598 mRNA_3230 0.48 0.1
156,602 + 11598 mRNA_3230 0.49 1.0
156,711 + 11598 mRNA_3230 0.54 2.8
157,016 + 11598 mRNA_3230 0.67 -0.4
157,148 - 11598 mRNA_3230 0.73 -1.1
157,158 - 11598 mRNA_3230 0.74 0.8
157,302 - 11598 mRNA_3230 0.80 1.2
157,320 + 11598 mRNA_3230 0.81 0.4
157,324 - 11598 mRNA_3230 0.81 0.1
157,453 - 11598 mRNA_3230 0.87 0.4
157,461 - 11598 mRNA_3230 0.87 -0.0
157,468 + 11598 mRNA_3230 0.87 0.6
157,617 - -0.5
157,627 + 2.7
157,629 - 2.8
157,665 - 0.2
157,672 + -0.6
157,676 + 1.4
157,679 + 1.9
157,710 - 1.7
157,923 - 1.2
158,269 + 11599 mRNA_3231 0.25 -0.6
158,379 + 11599 mRNA_3231 0.31 0.7
158,724 + 11599 mRNA_3231 0.50 -1.6