Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3226

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3225: 11593 - KOG0951 RNA helicase BRR2, DEAD-box superfamily, at 139733 to 140179 11593 mRNA_3226: 11594 - K05535 MNN2 alpha 1,2-mannosyltransferase, at 140412 to 142107 11594

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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139,532 - -0.0
139,543 + 2.1
139,641 - -1.2
139,693 + 0.8
140,078 - 11593 mRNA_3225 0.77 -0.5
140,085 + 11593 mRNA_3225 0.79 0.4
140,092 + 11593 mRNA_3225 0.80 0.2
140,093 - 11593 mRNA_3225 0.81 -0.8
140,095 - 11593 mRNA_3225 0.81 0.6
140,110 + 11593 mRNA_3225 0.84 -0.6
140,180 - -0.2
140,191 + -0.7
140,226 - -0.5
140,300 - 0.1
140,303 - -0.6
140,311 + 0.6
140,400 + -0.1
140,444 - -0.2
140,450 + -0.5
140,584 + 11594 mRNA_3226 0.10 0.7
140,790 + 11594 mRNA_3226 0.22 -1.0
140,846 + 11594 mRNA_3226 0.26 -0.0
141,117 + 11594 mRNA_3226 0.42 0.1
141,164 + 11594 mRNA_3226 0.44 -0.5
141,288 - 11594 mRNA_3226 0.52 0.0
141,634 - 11594 mRNA_3226 0.72 -0.1
141,742 + 11594 mRNA_3226 0.78 0.7
141,747 - 11594 mRNA_3226 0.79 0.7
141,761 - 11594 mRNA_3226 0.80 2.1
142,053 - -0.1
142,331 + 1.0
142,333 - -0.3
142,628 + -0.7
142,774 + 0.9
142,776 - 0.1
142,781 + 0.7
142,793 - -0.2
142,809 + 0.5
142,833 + -0.2
142,950 - -0.8