Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3212

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3211: 11579 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 102441 to 104131 11579 mRNA_3212: 11580 - BLAST related to TRX2-thioredoxin II [Melanopsichium pennsy..., at 104334 to 106276 11580 mRNA_3213: 11581 - HMMPfam-Tubulin domain-PF14881,SUPERFAMILY--SSF52490, at 106539 to 109229 11581

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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103,392 - 11579 mRNA_3211 0.56 0.5
103,400 - 11579 mRNA_3211 0.57 -0.2
103,419 + 11579 mRNA_3211 0.58 0.2
103,442 - 11579 mRNA_3211 0.59 0.1
103,513 - 11579 mRNA_3211 0.63 0.1
103,741 - 11579 mRNA_3211 0.77 1.3
104,031 + -1.7
104,133 - 2.2
104,271 + -0.7
104,442 + -0.0
104,725 + 11580 mRNA_3212 0.20 0.2
104,820 + 11580 mRNA_3212 0.25 0.9
104,892 - 11580 mRNA_3212 0.29 0.2
105,013 + 11580 mRNA_3212 0.35 -0.7
105,021 - 11580 mRNA_3212 0.35 0.9
105,266 - 11580 mRNA_3212 0.48 0.5
105,418 + 11580 mRNA_3212 0.56 -0.0
105,705 + 11580 mRNA_3212 0.71 1.6
105,709 + 11580 mRNA_3212 0.71 -1.7
105,858 - 11580 mRNA_3212 0.78 -0.7
106,009 - 11580 mRNA_3212 0.86 0.0
106,036 - 11580 mRNA_3212 0.88 -0.8
106,159 + 0.5
106,164 - 3.3
106,168 + 0.4
106,180 - -0.6
106,183 - -0.1
106,313 - -1.0
106,318 - 0.6
106,318 - 1.9
106,318 + 1.3
106,322 - -1.0
106,327 + 0.4
106,327 + 0.3
106,362 + 0.5
106,363 - -0.2
106,536 + 0.8