Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3178

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3177: 11545 - KOG2164 Predicted E3 ubiquitin ligase, at 22085 to 24622 11545 mRNA_3178: 11546 - KOG4561 Uncharacterized conserved protein, contains TBC domain, at 25091 to 26696 11546 mRNA_3179: 11547 - Hypothetical Protein, at 26940 to 28412 11547

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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24,234 - 11545 mRNA_3177 0.85 0.7
24,650 + 2.5
24,736 + 1.2
24,877 + 0.9
25,088 + -1.2
25,294 + 11546 mRNA_3178 0.13 0.2
25,308 + 11546 mRNA_3178 0.14 -0.7
25,401 - 11546 mRNA_3178 0.19 -0.2
25,575 + 11546 mRNA_3178 0.30 0.1
25,692 + 11546 mRNA_3178 0.37 0.5
25,909 + 11546 mRNA_3178 0.51 -1.1
26,027 + 11546 mRNA_3178 0.58 -0.9
26,273 + 11546 mRNA_3178 0.74 -1.7
26,443 - 11546 mRNA_3178 0.84 -0.6
26,475 - 11546 mRNA_3178 0.86 0.2
26,610 + -0.0
26,737 + 1.7
26,749 + 1.3
26,757 + 1.3
26,760 - -0.2
26,769 + -1.0
26,878 - -0.7
26,884 + 1.5
26,896 + 0.8
26,896 - 0.6
27,029 - 2.3
27,030 + 2.4
27,046 - 0.5
27,397 - 11547 mRNA_3179 0.31 -0.8