Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3170

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538 mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,174 - 11537 mRNA_3169 0.65 0.8
1,174 + 11537 mRNA_3169 0.65 0.4
1,259 + 11537 mRNA_3169 0.73 2.5
1,265 + 11537 mRNA_3169 0.74 0.1
1,268 + 11537 mRNA_3169 0.74 1.1
1,269 - 11537 mRNA_3169 0.74 0.0
1,288 - 11537 mRNA_3169 0.76 -0.4
1,297 + 11537 mRNA_3169 0.77 -1.8
1,303 - 11537 mRNA_3169 0.78 0.6
1,399 + 11537 mRNA_3169 0.87 0.4
1,412 - 11537 mRNA_3169 0.88 -0.9
1,419 - 11537 mRNA_3169 0.89 0.5
1,423 - 11537 mRNA_3169 0.90 -1.8
1,429 - 0.4
1,453 + 0.6
1,459 + 0.3
1,459 + -0.1
1,460 - -0.4
1,461 + 0.4
1,462 + 0.5
1,467 + 1.1
1,470 - -1.5
1,474 - 0.0
1,485 + 0.1
1,520 + 0.2
1,523 + 0.4
1,531 - 0.3
1,537 + 0.2
1,541 + 2.1
1,562 + 0.4
1,567 + 0.3
1,572 + -0.6
1,582 - -1.1
1,584 - 1.1
1,589 + -0.9
1,596 - 0.4
1,601 - -1.3
1,602 + -0.6
1,605 + 1.3
1,609 + 0.7
1,616 + -0.4
1,636 + 0.3
1,654 + 1.4
1,656 - 1.7
1,666 + 0.2
1,675 - 1.2
1,682 - -0.3
1,697 - 0.7
1,709 + -0.3
1,709 - 0.5
1,711 + 0.3
1,718 - -0.0
1,719 + -0.0
1,722 - 0.4
1,723 + 0.3
1,725 - 0.1
1,725 - 1.1
1,727 + -0.7
1,730 + -1.1
1,731 + 0.5
1,732 + 2.8
1,732 + 0.7
1,734 + -0.1
1,734 + -0.4
1,734 + 0.5
1,739 - -0.5
1,740 + 2.1
1,744 - -0.4
1,747 + 0.1
1,749 + -0.9
1,759 + 0.1
1,759 + 0.7
1,759 + 1.5
1,761 + 0.6
1,763 + -1.1
1,765 + -1.1
1,767 + 2.4
1,769 + -1.4
1,772 + 0.6
1,772 + 1.3
1,774 + 1.4
1,774 + -0.3
1,775 + 0.2
1,776 - 1.1
1,776 + 1.6
1,777 + 0.4
1,778 + 1.8
1,778 - -0.1
1,781 - 0.3
1,783 - 1.1
1,783 - -0.4
1,783 - 0.8
1,783 - 1.5
1,784 + 0.1
1,789 + 2.9
1,789 - -0.1
1,791 + -0.3
1,792 + 0.3
1,793 + 1.7
1,795 + 0.4
1,796 + -0.4
1,796 - 1.4
1,798 + 1.1
1,800 + -0.1
1,801 + -0.2
1,805 + 0.1
1,805 + 1.4
1,807 + 0.9
1,813 - 0.1
1,814 + -0.0
1,814 + 1.0
1,818 - 0.8
1,851 - -0.6
1,874 + 0.6
1,881 - 0.1
1,885 - -0.1
1,891 - -0.4
1,896 - 0.2
1,912 + -0.5
1,912 + 0.5
1,914 - -0.7
1,916 - -0.4
1,917 - 1.3
1,919 + 0.9
1,922 - 1.7
1,923 - 0.9
1,934 - 0.7
1,935 + -0.1
1,938 - -0.1
1,938 - 0.2
1,940 - 0.6
1,941 + -0.4
1,941 + -0.2
1,942 + -0.7
1,943 - -1.7
1,944 + -0.2
1,944 - -0.1
1,945 - 2.2
1,945 + 0.0
1,946 - -0.2
1,947 + 1.1
1,960 - -0.1
1,968 + -0.2
1,980 + 2.3
2,015 + -0.5
2,067 - 0.9
2,081 - 0.2
2,091 + 0.8
2,220 + -1.0
2,229 - 1.5
2,235 - -0.3
2,237 - 0.5
2,242 + -1.0
2,242 - -0.2
2,245 - 1.5
2,248 - 0.7
2,251 + 2.3
2,254 - -0.1
2,261 + -0.5
2,262 - -0.8
2,266 + 1.3
2,268 + -0.4
2,400 + 11538 mRNA_3170 0.21 -0.3
2,401 - 11538 mRNA_3170 0.21 1.0
2,404 + 11538 mRNA_3170 0.22 -0.6
2,414 + 11538 mRNA_3170 0.23 0.7
2,420 - 11538 mRNA_3170 0.23 1.3
2,439 + 11538 mRNA_3170 0.25 -0.2
2,446 + 11538 mRNA_3170 0.26 2.4
2,470 - 11538 mRNA_3170 0.28 1.7
2,516 - 11538 mRNA_3170 0.32 -1.0
2,550 - 11538 mRNA_3170 0.35 0.7
2,553 + 11538 mRNA_3170 0.36 -0.3
2,569 + 11538 mRNA_3170 0.37 -1.1
2,573 - 11538 mRNA_3170 0.38 0.6
2,581 + 11538 mRNA_3170 0.38 2.6
2,582 + 11538 mRNA_3170 0.38 1.4
2,611 + 11538 mRNA_3170 0.41 1.2
2,698 + 11538 mRNA_3170 0.49 -0.4
2,699 + 11538 mRNA_3170 0.49 1.4
2,755 + 11538 mRNA_3170 0.55 1.2
2,853 + 11538 mRNA_3170 0.64 -1.0
3,014 - 11538 mRNA_3170 0.79 -0.2
3,407 - -0.4
3,547 - 0.1
3,604 + 0.9
3,607 + 0.4
3,739 - -0.3
3,768 + -2.3
4,061 + 1.5
4,136 - -0.6
4,162 + 0.6
4,176 + -0.8