Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3158

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3157: 11525 - K00942 E2.7.4.8, gmk guanylate kinase, at 450126 to 451000 11525 mRNA_3158: 11526 - KOG0453 Aconitase/homoaconitase (aconitase superfamily), at 451339 to 452325 11526 mRNA_3159: 11527 - K15437 AIMP1, ARC1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1, at 452393 to 454134 11527

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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450,483 + 11525 mRNA_3157 0.41 0.4
450,606 - 11525 mRNA_3157 0.55 0.8
450,608 - 11525 mRNA_3157 0.55 1.5
450,614 + 11525 mRNA_3157 0.56 0.7
450,633 + 11525 mRNA_3157 0.58 0.1
450,768 + 11525 mRNA_3157 0.73 0.7
450,770 + 11525 mRNA_3157 0.74 -1.5
450,912 + 11525 mRNA_3157 0.90 0.0
450,986 + 0.1
451,051 - 0.3
451,058 + 0.4
451,060 - -0.9
451,063 + 1.5
451,063 + 2.4
451,064 + 0.9
451,066 + 1.1
451,069 - -0.4
451,075 + 1.8
451,082 + -0.2
451,089 - 0.2
451,091 + -0.0
451,092 + 0.4
451,092 + 0.0
451,232 + 0.6
451,234 + 1.5
451,246 - -0.2
451,382 + 1.2
451,401 + 0.7
451,523 + 11526 mRNA_3158 0.19 1.2
451,674 + 11526 mRNA_3158 0.34 1.2
451,679 + 11526 mRNA_3158 0.34 -0.1
451,710 + 11526 mRNA_3158 0.38 -0.4
451,820 + 11526 mRNA_3158 0.49 0.0
451,825 + 11526 mRNA_3158 0.49 0.5
451,839 + 11526 mRNA_3158 0.51 0.1
451,849 + 11526 mRNA_3158 0.52 1.5
451,953 - 11526 mRNA_3158 0.62 1.1
451,962 + 11526 mRNA_3158 0.63 2.1
451,963 - 11526 mRNA_3158 0.63 0.3
451,972 - 11526 mRNA_3158 0.64 1.4
451,973 + 11526 mRNA_3158 0.64 2.7
451,977 - 11526 mRNA_3158 0.65 1.4
452,121 + 11526 mRNA_3158 0.79 0.5
452,139 + 11526 mRNA_3158 0.81 0.2
452,158 + 11526 mRNA_3158 0.83 0.1
452,257 + 1.2
452,259 + -0.3
452,262 + -0.3
452,271 - 1.9
452,274 - -0.5
452,274 - 0.6
452,279 - 0.8
452,279 + -1.6
452,284 + -1.3
452,284 + 0.7
452,284 + 0.2
452,285 - 0.1
452,401 - 0.8
452,425 - 0.9
452,426 - -1.1
452,427 + -0.4
452,430 + -0.9
452,464 - 1.1
452,562 - 0.8
452,564 + 1.3
452,576 + 11527 mRNA_3159 0.11 -0.2
452,870 + 11527 mRNA_3159 0.27 0.2
452,872 + 11527 mRNA_3159 0.27 0.0
453,000 - 11527 mRNA_3159 0.35 0.8
453,010 - 11527 mRNA_3159 0.35 0.3
453,059 - 11527 mRNA_3159 0.38 -0.9
453,140 - 11527 mRNA_3159 0.43 0.0
453,281 + 11527 mRNA_3159 0.51 -5.3