Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3151

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435030 to 436321 11518 mRNA_3151: 11519 - Hypothetical Protein, at 436481 to 438109 11519 mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438780 to 439151 11520

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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435,484 + 11518 mRNA_3150 0.35 0.5
435,485 + 11518 mRNA_3150 0.35 -1.4
435,564 - 11518 mRNA_3150 0.41 0.3
435,571 + 11518 mRNA_3150 0.42 0.1
435,684 - 11518 mRNA_3150 0.51 -0.9
435,702 + 11518 mRNA_3150 0.52 -0.8
435,718 - 11518 mRNA_3150 0.53 -1.1
435,843 - 11518 mRNA_3150 0.63 0.0
435,865 + 11518 mRNA_3150 0.65 1.9
435,979 - 11518 mRNA_3150 0.73 -0.7
436,001 - 11518 mRNA_3150 0.75 0.1
436,102 - 11518 mRNA_3150 0.83 0.3
436,241 + 0.7
436,445 + 1.9
436,643 + 0.3
436,712 - 11519 mRNA_3151 0.14 -1.7
436,734 - 11519 mRNA_3151 0.16 0.2
436,799 + 11519 mRNA_3151 0.20 1.3
436,895 + 11519 mRNA_3151 0.25 2.3
436,901 + 11519 mRNA_3151 0.26 1.3
437,009 - 11519 mRNA_3151 0.32 2.8
437,041 + 11519 mRNA_3151 0.34 -0.2
437,214 - 11519 mRNA_3151 0.45 0.2
437,264 + 11519 mRNA_3151 0.48 -1.8
437,296 + 11519 mRNA_3151 0.50 0.2
437,300 + 11519 mRNA_3151 0.50 -0.6
437,300 - 11519 mRNA_3151 0.50 0.4
437,303 - 11519 mRNA_3151 0.50 0.2
437,315 - 11519 mRNA_3151 0.51 -1.0
437,328 - 11519 mRNA_3151 0.52 -0.9
437,329 + 11519 mRNA_3151 0.52 -0.1
437,445 - 11519 mRNA_3151 0.59 -0.4
437,445 - 11519 mRNA_3151 0.59 0.4
437,488 - 11519 mRNA_3151 0.62 1.1
437,491 + 11519 mRNA_3151 0.62 0.1
437,493 - 11519 mRNA_3151 0.62 -0.2
437,504 + 11519 mRNA_3151 0.63 1.0
437,524 - 11519 mRNA_3151 0.64 -0.2
437,547 - 11519 mRNA_3151 0.65 -0.0
437,639 + 11519 mRNA_3151 0.71 -0.5
437,650 + 11519 mRNA_3151 0.72 1.4
437,673 - 11519 mRNA_3151 0.73 -0.1
437,673 + 11519 mRNA_3151 0.73 -0.8
437,682 - 11519 mRNA_3151 0.74 -0.3
437,694 + 11519 mRNA_3151 0.74 0.2
437,717 + 11519 mRNA_3151 0.76 0.1
437,736 - 11519 mRNA_3151 0.77 1.2
437,763 + 11519 mRNA_3151 0.79 1.0
437,781 + 11519 mRNA_3151 0.80 1.5
437,786 - 11519 mRNA_3151 0.80 0.6
437,793 + 11519 mRNA_3151 0.81 0.7
437,803 - 11519 mRNA_3151 0.81 -0.2
437,811 + 11519 mRNA_3151 0.82 -0.2
437,818 - 11519 mRNA_3151 0.82 0.3
437,818 - 11519 mRNA_3151 0.82 0.0
437,819 + 11519 mRNA_3151 0.82 -0.7
437,820 - 11519 mRNA_3151 0.82 1.9
437,825 - 11519 mRNA_3151 0.83 0.7
437,826 - 11519 mRNA_3151 0.83 1.3
437,828 - 11519 mRNA_3151 0.83 1.4
437,828 - 11519 mRNA_3151 0.83 -0.6
437,830 - 11519 mRNA_3151 0.83 0.7
437,832 + 11519 mRNA_3151 0.83 1.5
437,833 - 11519 mRNA_3151 0.83 0.0
437,835 - 11519 mRNA_3151 0.83 1.0
437,836 - 11519 mRNA_3151 0.83 0.3
437,836 + 11519 mRNA_3151 0.83 0.8
437,836 + 11519 mRNA_3151 0.83 -1.0
437,839 - 11519 mRNA_3151 0.83 0.6
437,840 - 11519 mRNA_3151 0.83 -1.6
437,840 - 11519 mRNA_3151 0.83 1.0
437,842 - 11519 mRNA_3151 0.84 -0.4
437,843 + 11519 mRNA_3151 0.84 -0.3
437,844 - 11519 mRNA_3151 0.84 -1.3
437,845 + 11519 mRNA_3151 0.84 0.6
437,846 - 11519 mRNA_3151 0.84 -0.1
437,847 + 11519 mRNA_3151 0.84 -0.8
437,847 + 11519 mRNA_3151 0.84 -0.5
437,847 + 11519 mRNA_3151 0.84 0.4
437,847 + 11519 mRNA_3151 0.84 -0.8
437,848 + 11519 mRNA_3151 0.84 -0.4
437,850 - 11519 mRNA_3151 0.84 -0.2
437,850 + 11519 mRNA_3151 0.84 0.8
437,851 + 11519 mRNA_3151 0.84 1.5
437,851 + 11519 mRNA_3151 0.84 3.3
437,852 + 11519 mRNA_3151 0.84 -1.1
437,853 + 11519 mRNA_3151 0.84 -0.1
437,853 + 11519 mRNA_3151 0.84 0.7
437,853 - 11519 mRNA_3151 0.84 -0.1
437,854 - 11519 mRNA_3151 0.84 -0.6
437,855 + 11519 mRNA_3151 0.84 -0.1
437,855 + 11519 mRNA_3151 0.84 -0.3
437,856 + 11519 mRNA_3151 0.84 0.1
437,857 + 11519 mRNA_3151 0.84 0.5
437,862 - 11519 mRNA_3151 0.85 -1.4
437,866 + 11519 mRNA_3151 0.85 0.7
437,867 + 11519 mRNA_3151 0.85 -3.9
437,867 + 11519 mRNA_3151 0.85 1.5
437,868 - 11519 mRNA_3151 0.85 -0.0
437,870 + 11519 mRNA_3151 0.85 0.6
437,870 - 11519 mRNA_3151 0.85 0.6
437,870 + 11519 mRNA_3151 0.85 0.8
437,872 + 11519 mRNA_3151 0.85 1.4
437,873 - 11519 mRNA_3151 0.85 0.0
437,873 + 11519 mRNA_3151 0.85 -0.1
437,874 + 11519 mRNA_3151 0.86 1.3
437,874 + 11519 mRNA_3151 0.86 -0.3
437,884 + 11519 mRNA_3151 0.86 0.0
437,897 + 11519 mRNA_3151 0.87 -1.1
437,905 - 11519 mRNA_3151 0.87 -1.3
437,914 - 11519 mRNA_3151 0.88 0.6
437,920 + 11519 mRNA_3151 0.88 0.8
437,924 - 11519 mRNA_3151 0.89 2.0
437,927 - 11519 mRNA_3151 0.89 0.3
437,927 + 11519 mRNA_3151 0.89 -1.8
437,936 + 11519 mRNA_3151 0.89 -0.3
437,936 - 11519 mRNA_3151 0.89 1.4
437,940 + 11519 mRNA_3151 0.90 -0.4
437,951 - -3.1
437,958 + -0.5
437,996 + 0.7
438,035 - 0.9
438,041 - 0.9
438,047 - -0.3
438,050 + 1.4
438,051 - 2.1
438,053 + 0.6
438,058 - 1.4
438,058 - 0.0
438,059 - 0.2
438,061 - 1.1
438,061 + 0.4
438,061 + 0.3
438,062 + 0.0
438,064 + 1.5
438,066 - 0.7
438,067 - -0.5
438,067 - 0.7
438,069 - -1.0
438,070 - 2.3
438,070 + -0.5
438,070 - -0.2
438,072 - -0.6
438,076 + 0.6
438,077 + -0.5
438,077 + 0.4
438,080 - -0.1
438,080 + -0.1
438,082 - -0.0
438,083 + -0.5
438,085 + -0.9
438,089 - -2.3
438,089 + 3.1
438,090 - -1.4
438,091 - 0.2
438,094 + -0.3
438,098 + -0.3
438,106 + 0.1
438,107 + -0.1
438,112 + 0.7
438,112 + 0.3
438,124 + 0.6
438,131 - -0.2
438,142 - -0.1
438,148 - 0.3
438,150 - 1.4
438,161 + 0.4
438,168 - 1.9
438,180 - -0.8
438,180 + 0.8
438,181 + -0.5
438,193 + -0.0
438,195 - 2.1
438,208 - -0.3
438,208 + -0.7
438,227 + 2.5
438,231 - -0.6
438,233 - -0.6
438,234 - 0.9
438,236 + 0.3
438,237 - 1.5
438,239 + 0.8
438,242 + -0.0
438,242 + 1.6
438,252 - 0.0
438,253 - 2.7
438,257 - 0.7
438,257 - -0.2
438,259 + -1.6
438,259 + 1.2
438,263 - -0.1
438,264 + -1.5
438,266 - -3.1
438,282 + 0.0
438,283 - -0.7
438,287 - -0.6
438,294 - -2.0
438,303 - 1.9
438,306 + 1.1
438,316 - 0.6
438,319 + -0.1
438,320 - 0.6
438,326 + 0.7
438,330 - 0.3
438,341 + 1.5
438,344 - -0.1
438,346 - -0.2
438,347 - -0.1
438,361 - -1.5
438,368 + -0.2
438,380 - -0.7
438,414 - 1.1
438,426 - -0.4
438,436 - 0.9
438,446 + -0.4
438,469 - 1.7
438,471 - 2.8
438,472 + -0.5
438,478 - -0.6
438,503 + -0.3
438,542 - 1.2
438,552 + -0.2
438,560 - -0.3
438,603 - 0.5
438,612 - -0.4
438,614 - 0.3
438,629 + -0.5
438,643 + 1.2
438,645 + -0.5
438,655 - -1.4
438,662 - -1.5
438,778 - 1.6
438,784 + -1.0
438,844 - 11520 mRNA_3152 0.17 0.7
438,898 + 11520 mRNA_3152 0.32 -2.4
438,920 + 11520 mRNA_3152 0.38 2.0
438,952 - 11520 mRNA_3152 0.46 1.6
439,046 - 11520 mRNA_3152 0.72 2.1
439,067 - 11520 mRNA_3152 0.77 0.4
439,080 + 11520 mRNA_3152 0.81 -0.2
439,089 + 11520 mRNA_3152 0.83 -0.5