Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3144

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3143: 11511 - K10133 TP53I3 tumor protein p53-inducible protein 3, at 415939 to 417358 11511 mRNA_3144: 11512 - Hypothetical Protein, at 417526 to 421368 11512 mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422365 to 423654 11513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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416,634 - 11511 mRNA_3143 0.49 0.6
416,758 - 11511 mRNA_3143 0.58 -0.3
416,791 + 11511 mRNA_3143 0.60 0.2
416,807 + 11511 mRNA_3143 0.61 3.1
416,884 - 11511 mRNA_3143 0.67 0.8
416,914 - 11511 mRNA_3143 0.69 -1.6
416,955 + 11511 mRNA_3143 0.72 -1.4
417,060 - 11511 mRNA_3143 0.79 1.8
417,093 + 11511 mRNA_3143 0.81 -0.4
417,095 + 11511 mRNA_3143 0.81 -0.8
417,197 - 11511 mRNA_3143 0.89 0.9
417,214 + 11511 mRNA_3143 0.90 2.0
417,228 - 2.8
417,239 + 1.2
417,250 - -0.0
417,378 - 0.9
417,383 - -0.7
417,385 + 0.0
417,392 - -0.0
417,392 + -1.1
417,395 - -0.1
417,396 - 1.2
417,396 - 1.0
417,398 - 0.3
417,402 - -0.2
417,405 + 0.3
417,423 + -0.7
417,427 + 0.5
417,431 - 0.5
417,436 - 1.9
417,446 - 0.1
417,449 - 3.2
417,454 + 0.9
417,462 + 1.0
417,463 + -0.1
417,478 + 0.6
417,495 - 0.5
417,557 + -0.4
417,576 + -0.1
417,607 - 0.1
417,609 + 0.7
417,616 - -0.2
417,776 - 0.1
417,777 + -0.5
417,955 + 11512 mRNA_3144 0.11 -1.0
418,097 - 11512 mRNA_3144 0.15 -1.7
418,476 - 11512 mRNA_3144 0.25 0.5
419,024 - 11512 mRNA_3144 0.39 -1.3
419,439 + 11512 mRNA_3144 0.50 1.1
420,002 + 11512 mRNA_3144 0.64 -0.4
420,178 - 11512 mRNA_3144 0.69 1.3
420,278 - 11512 mRNA_3144 0.72 -0.1
420,296 - 11512 mRNA_3144 0.72 -0.4
420,432 + 11512 mRNA_3144 0.76 2.1
420,644 - 11512 mRNA_3144 0.81 0.5
420,740 + 11512 mRNA_3144 0.84 -0.3
420,845 - 11512 mRNA_3144 0.86 0.1
420,911 - 11512 mRNA_3144 0.88 -0.2
420,952 + 11512 mRNA_3144 0.89 -0.2
421,046 - 0.2
421,054 + 0.4
421,068 + -0.1
421,164 - 0.9
421,329 - -1.1
421,438 - 0.6
421,469 - 1.4
421,470 - 0.7
421,476 + 1.2
421,478 - 0.5
421,480 + -1.3
421,494 - 0.5
421,526 - -0.6
421,594 + 0.5
421,596 - -0.7
421,603 - 0.4
421,614 + 1.0
421,617 - 0.1
421,618 + -0.0
421,622 - 0.4
421,622 - 2.5
421,624 - 2.5
421,634 - -2.4
421,652 + -0.4
421,656 + 1.4
421,658 + 1.3
421,660 + 0.5
421,667 + -0.1
421,676 + -0.9
421,717 - 0.8
421,730 + 0.0
421,730 - 0.3
421,732 - 0.6
421,735 + -0.1
421,737 - 0.3
421,738 + 2.0
421,739 + 0.0
421,741 - 1.3
421,747 - -0.4
421,753 - 2.4
421,758 + -0.5
421,759 + 1.0
421,759 + 0.6
421,760 + 2.0
421,760 + 0.1
421,760 + -0.1
421,762 - 0.2
421,763 - 1.1
421,764 - -0.8
421,765 + -0.2
421,766 + -0.1
421,768 + -0.9
421,776 + 0.8
421,779 + -2.1
421,781 + -0.3
421,784 + 1.4
421,793 + 0.2
421,796 - 0.7
421,798 - -0.4
421,798 - -0.1
421,806 - 0.9
421,806 - -0.1
421,811 + 1.6
421,815 + 1.9
421,825 + 0.8
421,833 - -0.1
421,940 + -0.6
421,942 - 0.6
421,956 - 0.3
421,956 - 1.3
421,959 - -1.3
421,963 + -0.4
421,969 - 0.2
421,972 - -0.6
421,981 - 0.6
421,984 - 0.9
421,985 - 0.5
421,997 - 0.5
421,998 + -0.9
421,999 + -1.0
422,002 + -1.5
422,018 - -0.1
422,020 + -0.0
422,020 - 0.5
422,031 + 1.4
422,031 + 0.1
422,040 - -0.4
422,042 + -0.4
422,043 - 0.2
422,044 - 0.5
422,048 + 0.7
422,050 + 0.4
422,051 + -1.1
422,052 + -1.0
422,066 - -0.2
422,072 + 1.5
422,072 - 0.2
422,074 - 2.8
422,075 - 0.3
422,085 + 0.0
422,113 - -0.9
422,132 + 0.9
422,145 + -1.3
422,163 + -0.2
422,165 - 2.4
422,174 + 0.3
422,174 + -0.4
422,188 - 2.6
422,195 - 0.7
422,205 + -0.3
422,207 + 1.0
422,212 - 1.2
422,214 + -0.1
422,221 - -2.0
422,223 - -1.0
422,237 - 0.1
422,255 - 0.2
422,271 + 2.4
422,276 + 1.8
422,280 + 0.9
422,314 - -0.3
422,351 - -0.9
422,364 - 0.1